htslib
Here are 35 public repositories matching this topic...
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
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Oct 30, 2024 - Cython
SeqAn's official repository.
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Nov 29, 2024 - C++
cython + htslib == fast VCF and BCF processing
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Sep 16, 2024 - Cython
nim wrapper for htslib for parsing genomics data files
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Aug 27, 2024 - Nim
Graph realignment tools for structural variants
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Dec 8, 2022 - C++
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
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Aug 9, 2024 - C++
pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
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Mar 3, 2017 - Python
BigWig manpulation tools using libBigWig and htslib
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Aug 8, 2024 - C
a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.
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Nov 27, 2024 - C++
The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049
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Nov 27, 2024 - C
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
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Dec 11, 2020 - C
HTSlib bindings for Crystal
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May 2, 2024 - Crystal
Process Illumina instrument data into SAM/BAM/CRAM files.
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Oct 1, 2024 - C
Use simple expressions to filter a BAM/CRAM file
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Feb 10, 2024 - C
X11 related utilities for hts
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May 10, 2019 - C++
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