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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 6

Repositories

Showing 10 of 82 repositories
  • npg_ml_warehouse Public

    Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.

    wtsi-npg/npg_ml_warehouse’s past year of commit activity
    Perl 0 13 9 1 Updated Feb 20, 2025
  • kneaddata_bmtagger Public
    wtsi-npg/kneaddata_bmtagger’s past year of commit activity
    Dockerfile 0 MIT 1 0 0 Updated Feb 20, 2025
  • ml_warehouse Public

    Perl DBIx binding to a warehouse housing data from multiple LIM systems

    wtsi-npg/ml_warehouse’s past year of commit activity
    Perl 3 14 1 1 Updated Feb 20, 2025
  • npg_tracking Public

    WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

    wtsi-npg/npg_tracking’s past year of commit activity
    Perl 3 19 12 2 Updated Feb 20, 2025
  • npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    wtsi-npg/npg_seq_pipeline’s past year of commit activity
    Perl 9 17 23 8 Updated Feb 20, 2025
  • npg_qc Public

    QC checks and metrics for Illumina NGS data

    wtsi-npg/npg_qc’s past year of commit activity
    Perl 5 18 20 0 Updated Feb 20, 2025
  • npg-python-lib Public

    A library of Python functions and classes common to NPG applications

    wtsi-npg/npg-python-lib’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Feb 19, 2025
  • valet Public

    Automated data mangement for Oxford Nanopore DNA sequencing instruments

    wtsi-npg/valet’s past year of commit activity
    Go 2 GPL-3.0 4 4 0 Updated Feb 18, 2025
  • sqyrrl Public

    Sqyrrl - an HTTP server for files hosted in iRODS

    wtsi-npg/sqyrrl’s past year of commit activity
    Go 0 GPL-3.0 4 2 1 Updated Feb 18, 2025
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 1 GPL-3.0 8 1 0 Updated Feb 18, 2025
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