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Add obo for Wang's Fig 1 for testing #183
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dvklopfenstein committed Sep 28, 2020
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11 changes: 11 additions & 0 deletions tests/data/ssWang/README.md
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# Wang 2007

**A new method to measure the semantic similarity of GO terms**
Wang JW et al.
2007 | _Bioinformatics_ | PMID: [17344234](https://pubmed.ncbi.nlm.nih.gov/17344234/) | DOI: [10.1093/bioinformatics/btm087](https://academic.oup.com/bioinformatics/article/23/10/1274/197095)

## Fig 1) DAG for GO term Intracellular Membrane-bound Organelle: 0043231
![Intracellular membrance-bound organelle](fig1.png)


Copyright (C) 2020-present, DV Klopfenstein. All rights reserved.
47 changes: 47 additions & 0 deletions tests/data/ssWang/fig1.obo
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format-version: 1.2
data-version: releases/2007-07-01

[Term]
id: GO:0005575
name: Cellular component
namespace: cellular_component

[Term]
id: GO:0005623
name: Cell
namespace: cellular_component
is_a: GO:0005575 ! Cellular component

[Term]
id: GO:0005622
name: Intracellular
namespace: cellular_component
relationship: part_of GO:0005623 ! Cell

[Term]
id: GO:0043226
name: Organelle
namespace: cellular_component
is_a: GO:0005575 ! Cellular component

[Term]
id: GO:0043227
name: Membrane-bound organelle
namespace: cellular_component
is_a: GO:0043226 ! Organelle

[Term]
id: GO:0043229
name: Intracellular organelle
namespace: cellular_component
is_a: GO:0043226 ! Organelle
relationship: part_of GO:0005622 ! Intracellular

[Term]
id: GO:0043231
name: Intracellular membrance-bound organelle
namespace: cellular_component
is_a: GO:0043229 ! Intracellular organelle
is_a: GO:0043227 ! Membrane-bound organelle


Binary file added tests/data/ssWang/fig1.png
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3 changes: 3 additions & 0 deletions tests/data/ssWang/makefile
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png:
../../../scripts/go_plot.py --obo fig1.obo -r -o fig1.png GO:0043231

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