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45 Open 169 Closed
45 Open 169 Closed
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Issues list

Where to store obo file
#307 opened Nov 1, 2024 by Tim-Kirkwood
1
No TAXID for Ecoli and incompatibility of the Ecoli specific annotation file
#306 opened Oct 30, 2024 by FH96
Extra 'label' node at top of DAG of GO terms
#305 opened Oct 8, 2024 by avigailtaylor
I couldn't get "regulates" ancestors terms bug
#304 opened Sep 16, 2024 by 10myl200
@tanghaibao
7
Keeping terms not in DAG
#291 opened Apr 27, 2024 by Prunoideae
2
Text in GO term box - plotting
#286 opened Feb 6, 2024 by LeilaFattel
Error in making result file
#274 opened Jun 24, 2023 by Rhia15
3
Issues with find.enrichment.py when I use the same IDs for study.txt and population.txt
#273 opened Jun 22, 2023 by pomorale
1
Optimising go term tests
#272 opened Jun 15, 2023 by francicco
What's the point of removing genes with identical identifiers?
#271 opened Jun 2, 2023 by shelkmike
Information content of a custom GO annotation.
#270 opened May 2, 2023 by ohdongha
1
Best practices for background gene sets
#267 opened Mar 28, 2023 by stanleyjs
3
Conditional tests? enhancement
#264 opened Feb 24, 2023 by sjfleming
Idea: Flag to compute enrichment for user-specified GO terms enhancement
#263 opened Feb 21, 2023 by DylanSteinecke
Keep on receiving **FATAL: NO POPULATION ITEMS SEEN IN THE ANNOTATIONS in my current work
#260 opened Feb 7, 2023 by HelloWorldLTY
Different results when restricting background set to only include genes with at least one annotation term
#259 opened Jan 27, 2023 by Maryam-Haghani
1
How to get most recent common ancesters and shortest path distance between two terms?
#256 opened Dec 19, 2022 by jasperhyp
Error: no population items seen in the annotations when using GAF file
#254 opened Dec 6, 2022 by jlastoll
1
Output columns of grouped_gos
#250 opened Nov 7, 2022 by cestaroa
Some questions about gene selection
#249 opened Oct 15, 2022 by HelloWorldLTY
AttributeError: 'GOEnrichmentStudy' object has no attribute 'print_results'
#248 opened Aug 3, 2022 by Liyong-Zhang
Error message while running goatools
#247 opened Jul 27, 2022 by akaur1988
Does gene ontology enrichment analysis work with Ensembl gene ids?
#244 opened Jul 11, 2022 by BerkKilicoglu
Discrepancies between using GoSearch and direct search on geneontology.org
#243 opened Jul 11, 2022 by jasperhyp
1
Unhelpful Documentation, Missing High Level Interface
#241 opened Jun 15, 2022 by fratajcz
5
ProTip! Adding no:label will show everything without a label.