Add dockerfile

dockerfile

@@ -0,0 +1,56 @@
+FROM continuumio/miniconda3
+
+ENV TZ=America/Chicago
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
+RUN apt-get update -y
+RUN apt-get upgrade -y
+
+# install dependencies
+RUN apt-get install -y libgl1-mesa-glx \
+                        libgl1-mesa-dev \
+                        libglu1-mesa-dev \
+                        freeglut3-dev \
+                        libosmesa6 \
+                        libosmesa6-dev \
+                        libgles2-mesa-dev \
+                        curl \
+                        wget \
+                        libx11-6 \
+                        libxt6 \
+                        libgl1 \
+                        libxcb-icccm4 \
+                        libxcb-image0 \
+                        libxcb-keysyms1 \
+                        libxcb-render-util0 \
+                        libxkbcommon-x11-0 \
+                        libxcb-randr0 \
+                        libxcb-xinerama0 \
+                        libxm4 \
+                        libtiff5 \
+                        libxcursor1 \
+                        libxinerama1
+
+# download cubit
+RUN wget -O /cubit.deb https://f002.backblazeb2.com/file/cubit-downloads/Coreform-Cubit/Releases/Linux/Coreform-Cubit-2023.11%2B43088-Lin64.deb
+
+# install cubit
+RUN dpkg -i cubit.deb
+ENV PYTHONPATH=/opt/Coreform-Cubit-2023.11/bin/
+
+# parastell env
+COPY ./environment.yml /environment.yml
+RUN conda env create -f environment.yml
+RUN echo "source activate parastell_env" >> ~/.bashrc
+
+WORKDIR /opt
+
+# install pystell_uw
+RUN git clone https://github.com/aaroncbader/pystell_uw.git
+ENV PYTHONPATH=$PYTHONPATH:/opt/pystell_uw
+
+# install parastell
+RUN git clone https://github.com/svalinn/parastell.git
+ENV PYTHONPATH=$PYTHONPATH:/opt/parastell
+
+WORKDIR /
+

environment.yml

@@ -17,3 +17,4 @@ dependencies:
   - pip:
       - netcdf4
       - pyyaml
+      - pytest