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xarray DataTree #8
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@thewtex: writing here what I would have said last night on the zarr call had we not run out of time:
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Hi @TomNicholas @joshmoore , Thank you for the tips!! 🙏 Yes, I will move forward with these excellent suggestions! Current plans (thoughts welcome):
It is later down the line, but I am interested in your thoughts on how we could possibly use this to make |
The
Future, additional array validation is being added per:
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Draft implementation based on xarray DataTree in #10 SpatialImage was rebuilt on xarray dataclasses in spatial-image/spatial-image#8 and the constructor was refactored to correspond to the NGFF v0.4 data model. Todo: Add support for additional dimension orders. |
Channel-first support added in spatial-image 0.2.0 |
Full initial implementation in #11 To come: more examples |
NGFF 0.4 validation in #18 |
Basic docs: in #20 |
Rename + updates to xarray-datatree 0.0.5 refactors in #35 |
Glad you were able to update to update to accommodate those breaking changes in datatree so quickly @thewtex - let me know if you have any particular issues or suggestions! |
@TomNicholas if you please review / merge / cut a release with xarray-contrib/datatree#90 that would be very helpful! This is a blocker to create demos e.g. re #32 and related to https://github.com/thewtex/shardedstore . With these demos @joshmoore this is worthwhile discussing with the zarr community. |
@TomNicholas again for your help with this! We moved to the recently migrated |
Hi there, I was just wondering if you had seen the prototype xarray DataTree we're working on? Supporting multi-scale image arrays is supposed to be one of the use cases so if you have any thoughts I would love to hear them!
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