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Add image segmentation docs#1821

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mattcai merged 14 commits intomasterspacetx/starfish:masterfrom mcai-segmentation-docsspacetx/starfish:mcai-segmentation-docsCopy head branch name to clipboardMar 12, 2020

+583-25

Commits

Commits on Feb 21, 2020

• added watershed tutorial and fixed typo in MinDistanceLabel docstring

  mattcai

  committed
  1ec5522

Commits on Feb 22, 2020

• had to remove ':py:param:' because it's not recognized by sphinx

  mattcai

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  28d5371

• fixed broken references

  mattcai

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  3639d43

• fix ':term:<auxiliary images>' not in glossary

  mattcai

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  132c56f

Commits on Feb 24, 2020

• completed manual segmentation tutorial

  mattcai

  committed
  19adc96

Commits on Feb 26, 2020

• completed segmentation tutorials and edited ilastik_pre_trained_probability.py to accept variable data_set names.

  mattcai

  committed
  b9a326f

• removed 'plot_' prefix and added necessary files

  mattcai

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  6ec8aae

• Merge remote-tracking branch 'origin/master' into mcai-segmentation-docs

  mattcai

  committed
  97464b9

Commits on Feb 28, 2020

• Update docs/source/creating_an_image_processing_pipeline/index.rst

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  mattcai

  and

  Tony Tung

  authored
  2be6097

• Update docs/source/creating_an_image_processing_pipeline/index.rst

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  mattcai

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  Tony Tung

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• Update docs/source/creating_an_image_processing_pipeline/index.rst

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  mattcai

  and

  Tony Tung

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• Update docs/source/creating_an_image_processing_pipeline/index.rst

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  mattcai

  and

  Tony Tung

  authored
  f695cb4

• Update examples/manual_segmentation.py

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  mattcai

  and

  Tony Tung

  authored
  2dad5c3

• Update ilastik_segmentation.py

  mattcai

  authored
  f7e4622