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adding mouse v human example to starfish.data #1741

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Jan 22, 2020
Merged

adding mouse v human example to starfish.data #1741

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16 changes: 16 additions & 0 deletions starfish/data.py
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Original file line number Diff line number Diff line change
Expand Up @@ -53,6 +53,22 @@ def allen_smFISH(use_test_data: bool = False) -> Experiment:
"https://d26bikfyahveg8.cloudfront.net/smFISH/mouse/formatted_with_DAPI/experiment.json")


def MOUSE_V_HUMAN():
"""
Corresponds to sequencing 4 bases of the beta-actin gene in co-cultured mouse and human
fibroblasts. These 4 bases only differ in one position, a SNP between species. as such,
these data offer ground truth information to validate a cell typing exercise

`<https://www.ncbi.nlm.nih.gov/pubmed/23852452>`_

Returns
-------
Experiment
"""
return Experiment.from_json(
"https://d2z4zivcmlmaj1.cloudfront.net/ISS/mouse_vs_human/experiment.json")


def DARTFISH(use_test_data: bool = False) -> Experiment:
"""
Loads an experiment with a single field of view from unpublished data generated with DARTFISH v1
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