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Neaten logger-init code #196

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merged 1 commit into from
Jun 25, 2022
Merged

Neaten logger-init code #196

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12 changes: 4 additions & 8 deletions apis/python/examples/uniformizer.py
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Original file line number Diff line number Diff line change
Expand Up @@ -51,14 +51,10 @@ def main() -> int:
args = parser.parse_args()

if args.verbose:
# tiledbsc.logging.logger.setLevel(logging.INFO)
# logger = logging.getLogger('tiledbsc')
# logger.setLevel(logging.INFO)
# logging.getLogger("tiledbsc").setLevel(logging.INFO)
# Not able to get any of the above to 'stick'. The following sets level for the whole app,
# not just the tiledbsc library, but that's an acceptable workaround since this CLI does
# nothing except invoke the tiledbsc library.
logging.basicConfig(level=logging.INFO)
tiledbsc.logging.logger.setLevel(logging.INFO)
logger = logging.getLogger("tiledbsc")
logger.setLevel(logging.INFO)
logger.addHandler(logging.StreamHandler())

uniformizer = Uniformizer(
atlas_uri=args.atlas_uri,
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12 changes: 4 additions & 8 deletions apis/python/tools/ingestor
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Original file line number Diff line number Diff line change
Expand Up @@ -100,14 +100,10 @@ select `relative=True`. (This is the default.)
write_soco = args.soco
verbose = not args.quiet
if verbose:
# tiledbsc.logging.logger.setLevel(logging.INFO)
# logger = logging.getLogger('tiledbsc')
# logger.setLevel(logging.INFO)
# logging.getLogger("tiledbsc").setLevel(logging.INFO)
# Not able to get any of the above to 'stick'. The following sets level for the whole app,
# not just the tiledbsc library, but that's an acceptable workaround since this CLI does
# nothing except invoke the tiledbsc library.
logging.basicConfig(level=logging.INFO)
tiledbsc.logging.logger.setLevel(logging.INFO)
logger = logging.getLogger("tiledbsc")
logger.setLevel(logging.INFO)
logger.addHandler(logging.StreamHandler())

if args.relative is not None:
relative = args.relative[0]
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12 changes: 4 additions & 8 deletions apis/python/tools/outgestor
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Original file line number Diff line number Diff line change
Expand Up @@ -78,14 +78,10 @@ def main():

verbose = not args.quiet
if verbose:
# tiledbsc.logging.logger.setLevel(logging.INFO)
# logger = logging.getLogger('tiledbsc')
# logger.setLevel(logging.INFO)
# logging.getLogger("tiledbsc").setLevel(logging.INFO)
# Not able to get any of the above to 'stick'. The following sets level for the whole app,
# not just the tiledbsc library, but that's an acceptable workaround since this CLI does
# nothing except invoke the tiledbsc library.
logging.basicConfig(level=logging.INFO)
tiledbsc.logging.logger.setLevel(logging.INFO)
logger = logging.getLogger("tiledbsc")
logger.setLevel(logging.INFO)
logger.addHandler(logging.StreamHandler())

soma = tiledbsc.SOMA(input_path)
tiledbsc.io.to_h5ad(soma, output_path)
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