Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Avoid proofreading actions while the last one is not finished #6325

Merged
merged 14 commits into from
Jul 26, 2022
Merged
Show file tree
Hide file tree
Changes from 12 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CHANGELOG.unreleased.md
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,7 @@ For upgrade instructions, please check the [migration guide](MIGRATIONS.released
- The Layers tab now displays an Add Skeleton Annotation Layer button with which volume-only annotations can be converted to hybrid annotations. [#6330](https://github.com/scalableminds/webknossos/pull/6330)

### Fixed
- Fixed an error if multiple proofreading actions were performed in rapid succession. If webKnossos is busy, inputs to the viewports are disabled from now on. [#6325](https://github.com/scalableminds/webknossos/pull/6325)

### Removed
- Annotation Type was removed from the info tab. [#6330](https://github.com/scalableminds/webknossos/pull/6330)
Expand Down
7 changes: 7 additions & 0 deletions frontend/javascripts/oxalis/model/sagas/mapping_saga.ts
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@ import {
getAgglomeratesForDatasetLayer,
} from "admin/admin_rest_api";
import type { APIMapping } from "types/api_flow_types";
import { setLayerMappingsAction } from "oxalis/model/actions/dataset_actions";
import { getLayerByName, getMappingInfo } from "oxalis/model/accessors/dataset_accessor";
import type { ActiveMappingInfo, Mapping } from "oxalis/store";
import ErrorHandling from "libs/error_handling";
Expand Down Expand Up @@ -114,6 +115,12 @@ function* maybeFetchMapping(
// @ts-expect-error ts-migrate(2769) FIXME: No overload matches this call.
call(getAgglomeratesForDatasetLayer, ...params),
]);
// Make sure the available mappings are persisted in the store if they are not already
const areServerHdf5MappingsInStore =
"agglomerates" in layerInfo && layerInfo.agglomerates != null;
if (!areServerHdf5MappingsInStore) {
yield* put(setLayerMappingsAction(layerName, jsonMappings, serverHdf5Mappings));
}
const editableMappings = yield* select((state) =>
state.tracing.volumes
.filter((volumeTracing) => volumeTracing.mappingIsEditable)
Expand Down
24 changes: 20 additions & 4 deletions frontend/javascripts/oxalis/model/sagas/proofread_saga.ts
Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,6 @@ import {
import {
pushSaveQueueTransaction,
setVersionNumberAction,
undoAction,
} from "oxalis/model/actions/save_actions";
import { splitAgglomerate, mergeAgglomerate } from "oxalis/model/sagas/update_actions";
import Model from "oxalis/model";
Expand All @@ -47,6 +46,7 @@ import { loadAgglomerateSkeletonWithId } from "oxalis/model/sagas/skeletontracin
import { getConstructorForElementClass } from "oxalis/model/bucket_data_handling/bucket";
import { Tree } from "oxalis/store";
import { APISegmentationLayer } from "types/api_flow_types";
import { setBusyBlockingInfoAction } from "oxalis/model/actions/ui_actions";

export default function* proofreadMapping(): Saga<any> {
yield* take("INITIALIZE_SKELETONTRACING");
Expand Down Expand Up @@ -279,13 +279,20 @@ function* splitOrMergeAgglomerate(action: MergeTreesAction | DeleteEdgeAction) {
const isHdf5MappingEnabled = yield* call(ensureHdf5MappingIsEnabled, layerName);
if (!isHdf5MappingEnabled) return;

const busyBlockingInfo = yield* select((state) => state.uiInformation.busyBlockingInfo);
if (busyBlockingInfo.isBusy) {
console.warn(`Ignoring proofreading action (reason: ${busyBlockingInfo.reason || "null"})`);
return;
}

yield* put(setBusyBlockingInfoAction(true, "Proofreading action"));

if (!volumeTracing.mappingIsEditable) {
try {
yield* call(createEditableMapping);
} catch (e) {
console.error(e);
// Undo the last splitting/merging action since the proofreading action did not succeed
yield* put(undoAction());
Comment on lines -287 to -288
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Why do we no longer undo the action when the call failed?

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This was an oversight while merging the original proofreading PR. Undo/Redo is actually not allowed if the proofreading tool is active and a warning in that regard is shown to the user if it is triggered. This was added kind of last-minute, because the actual proofreading actions cannot be undone yet. Unfortunately, that's why this line had to be removed for now.

yield* put(setBusyBlockingInfoAction(false));
return;
}
}
Expand All @@ -305,6 +312,7 @@ function* splitOrMergeAgglomerate(action: MergeTreesAction | DeleteEdgeAction) {
const targetTree = findTreeByNodeId(trees, targetNodeId).getOrElse(null);

if (sourceTree == null || targetTree == null) {
yield* put(setBusyBlockingInfoAction(false));
return;
}

Expand All @@ -330,6 +338,7 @@ function* splitOrMergeAgglomerate(action: MergeTreesAction | DeleteEdgeAction) {
if (action.type === "MERGE_TREES") {
if (sourceNodeAgglomerateId === targetNodeAgglomerateId) {
Toast.error("Segments that should be merged need to be in different agglomerates.");
yield* put(setBusyBlockingInfoAction(false));
return;
}
items.push(
Expand All @@ -344,6 +353,7 @@ function* splitOrMergeAgglomerate(action: MergeTreesAction | DeleteEdgeAction) {
} else if (action.type === "DELETE_EDGE") {
if (sourceNodeAgglomerateId !== targetNodeAgglomerateId) {
Toast.error("Segments that should be split need to be in the same agglomerate.");
yield* put(setBusyBlockingInfoAction(false));
return;
}
items.push(
Expand All @@ -356,7 +366,10 @@ function* splitOrMergeAgglomerate(action: MergeTreesAction | DeleteEdgeAction) {
);
}

if (items.length === 0) return;
if (items.length === 0) {
yield* put(setBusyBlockingInfoAction(false));
return;
}

yield* put(pushSaveQueueTransaction(items, "mapping", volumeTracingId));
yield* call([Model, Model.ensureSavedState]);
Expand All @@ -372,6 +385,7 @@ function* splitOrMergeAgglomerate(action: MergeTreesAction | DeleteEdgeAction) {
volumeTracingWithEditableMapping == null ||
volumeTracingWithEditableMapping.mappingName == null
) {
yield* put(setBusyBlockingInfoAction(false));
return;
}

Expand Down Expand Up @@ -412,6 +426,8 @@ function* splitOrMergeAgglomerate(action: MergeTreesAction | DeleteEdgeAction) {
);
}

yield* put(setBusyBlockingInfoAction(false));

/* Remove old meshes and load updated meshes */

if (proofreadUsingMeshes()) {
Expand Down
11 changes: 8 additions & 3 deletions frontend/javascripts/oxalis/view/input_catcher.tsx
Original file line number Diff line number Diff line change
Expand Up @@ -134,18 +134,23 @@ function InputCatcher({
);

return (
<div className="flexlayout-dont-overflow">
<div
className="flexlayout-dont-overflow"
onContextMenu={ignoreContextMenu}
style={{ cursor: busyBlockingInfo.isBusy ? "wait" : cursorForTool[adaptedTool] }}
>
<div
id={`inputcatcher_${viewportID}`}
ref={(domElement) => {
domElementRef.current = domElement;
}}
onContextMenu={ignoreContextMenu}
data-value={viewportID}
className={`inputcatcher ${viewportID}`}
style={{
position: "relative",
cursor: busyBlockingInfo.isBusy ? "wait" : cursorForTool[adaptedTool],
// Disable inputs while wk is busy. However, keep the custom cursor and the ignoreContextMenu handler
// which is why those are defined at the outer element.
pointerEvents: busyBlockingInfo.isBusy ? "none" : "auto",
}}
>
<ViewportStatusIndicator />
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -234,7 +234,7 @@ class SynapseTree extends React.Component<Props, State> {
<Dropdown // Lazily create the dropdown menu and destroy it again, afterwards
overlay={() => this.createSegmentDropdownMenu(data.id)}
autoDestroy
placement="bottomCenter"
placement="bottom"
Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Saw this deprecation warning: Warning: [antd: Dropdown] You are using 'bottomCenter' placement in Dropdown, which is deprecated. Try to use 'bottom' instead.

visible={this.state.activeSegmentDropdownKey === key}
onVisibleChange={(isVisible) =>
this.handleSegmentDropdownMenuVisibility(key, isVisible)
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -384,7 +384,7 @@ function _SegmentListItem({
// does not work properly. See https://github.com/react-component/trigger/issues/106#issuecomment-948532990
// @ts-expect-error ts-migrate(2322) FIXME: Type '{ children: Element; overlay: () => Element;... Remove this comment to see the full error message
autoDestroy
placement="bottomCenter"
placement="bottom"
visible={activeDropdownSegmentId === segment.id}
onVisibleChange={(isVisible) => handleSegmentDropdownMenuVisibility(segment.id, isVisible)}
trigger={["contextMenu"]}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -393,7 +393,7 @@ class TreeHierarchyView extends React.PureComponent<Props, State> {
<div>
<Dropdown
overlay={createMenu}
placement="bottomCenter" // The overlay is generated lazily. By default, this would make the overlay
placement="bottom" // The overlay is generated lazily. By default, this would make the overlay
// re-render on each parent's render() after it was shown for the first time.
// The reason for this is that it's not destroyed after closing.
// Therefore, autoDestroy is passed.
Expand Down Expand Up @@ -533,7 +533,7 @@ class TreeHierarchyView extends React.PureComponent<Props, State> {
// does not work properly. See https://github.com/react-component/trigger/issues/106#issuecomment-948532990
// @ts-expect-error ts-migrate(2322) FIXME: Type '{ children: Element; overlay: () => Element;... Remove this comment to see the full error message
autoDestroy
placement="bottomCenter"
placement="bottom"
visible={this.state.activeTreeDropdownId === tree.treeId} // explicit visibility handling is required here otherwise the color picker component for "Change Tree color" is rendered/positioned incorrectly
onVisibleChange={(isVisible) =>
this.handleTreeDropdownMenuVisibility(tree.treeId, isVisible)
Expand Down