v0.4.54

This update changes GATK-Parameters to support newer versions.

Thanks to @NikdAK.

v0.4.53

This update fixes a bug which was introduced in v0.4.47 and resulted in an incorrect generation of the SNP database used for (amongst others) base recalibration.

For the changes to take effect, please remove the “ref” folder and re-run the “test” option, as detailed: https://github.com/roland-rad-lab/MoCaSeq#tldr (Explicitly pull rolandradlab/mocaseq:0.4.53)

Thanks to @nilesh-iiita and @NikdAK.

v0.4.52

Fixed HMMCopy resolution settings for WGS.

v0.4.51

Switched to usage of pre-built binary for Delly.

v0.4.50

Updated delly to 0.8.3

v0.4.49

bcftools temp directory can be now chosen by the user (thanks to @justinkhuang)

v0.4.48

bcftools temp files are now written to the optioned temp directory, n…

v0.4.47

bcftools temp files are now written to the optioned temp directory, n…

v0.4.46

Fixed syntax problem causing abort of docker image creation.

v0.4.45

Quick move of an R package to the right location.