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Switched to usage of pre-built binary for Delly
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sebastianlange committed Jun 20, 2020
1 parent 68b1997 commit ba9fa6f
Showing 1 changed file with 5 additions and 7 deletions.
12 changes: 5 additions & 7 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -196,13 +196,11 @@ RUN cd ${TEMP_DIR} \
libboost-filesystem-dev \
libboost-iostreams-dev \
&& cd ${TEMP_DIR} \
&& git clone https://github.com/dellytools/delly.git \
&& mv delly delly-0.8.3 \
&& cd delly-0.8.3 \
&& git checkout 'v0.8.3' \
&& make STATIC=1 prefix=/usr/local install \
&& cd ${TEMP_DIR} \
&& rm -rf delly-0.8.3 \
&& wget https://github.com/dellytools/delly/releases/download/v0.8.3/delly_v0.8.3_linux_x86_64bit \
&& mkdir ${PACKAGE_DIR}/delly-0.8.3/ \
&& mv delly_v0.8.3_linux_x86_64bit ${PACKAGE_DIR}/delly-0.8.3/delly \
&& chmod a+x ${PACKAGE_DIR}/delly-0.8.3/delly \
&& ln -sf ${PACKAGE_DIR}/delly-0.8.3/delly ${PACKAGE_DIR}/bin/delly \
# Fasta-to-Fastq (https://github.com/ekg/fasta-to-fastq/)
&& cd ${TEMP_DIR} \
&& git clone https://github.com/ekg/fasta-to-fastq.git \
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