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1.4.0 include LCS lineage read screening
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@replikation replikation released this 14 Mar 09:03
· 145 commits to master since this release
1.4.0
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Learn about vigilant mode.

What's Changed

  • included LCS pooled sample implementation by @hoelzer and @replikation in #216
    • can be activated via --screen_reads
    • can take approx. 4-5 h per sample! so make sure you have a cluster/cloud to distribute the workload
  • bumping the default nextclade and pangolin containers
  • updated kraken2 database via @oliverdrechsel for read classification closes #178

Full Changelog: 1.3.0...1.4.0

Contributors

oliverdrechsel, hoelzer, and replikation
Assets 2
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