[REVIEW] reenable lightgbm test with a lower (1%) proba accuracy threshold #2799
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as explained by @hcho3 , lightgbm uses float64 in thresholds. FIL rounds them to float32, which slightly (and unpredictably) alters the predictions.
Since the tests are deterministic, it takes a code [version] change to change the conditions and trigger the discrepancy.
By lowering the proba (not prediction!) accuracy threshold to 1%, we can pass the test until FIL adds float64 threshold support.
This should be a realistic requirement, especially given that the discrepancy shrinks with a more realistic number of input columns, as less information is derived from the exact value of each.