Code

Remove legacy renumbering#2949

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rapids-bot[bot] merged 173 commits intorapidsai:branch-23.04rapidsai/cugraph:branch-23.04from jnke2016:branch-22.12_remove-legacy-renumjnke2016/cugraph:branch-22.12_remove-legacy-renumCopy head branch name to clipboardApr 5, 2023

+2,041-2,105

Commits

Commits on Nov 17, 2022

• add fixme to remove legacy renumbering

  jnke2016

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Commits on Nov 20, 2022

• Merge remote-tracking branch 'upstream/branch-22.12' into branch-22.12_remove-legacy-renum

  jnke2016

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Commits on Jan 6, 2023

• Merge remote-tracking branch 'upstream/branch-23.02' into branch-22.12_remove-legacy-renum

  jnke2016

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Commits on Jan 12, 2023

• remove the renumebring restriction on the MNMG graph creation

  jnke2016

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• properly stop the dask client

  jnke2016

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• add deprecation warning when using the argument 'legacy_renum_only' and remove the cython.cu renumbering path

  jnke2016

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• remove extra variable

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-23.02' into branch-22.12_remove-legacy-renum

  jnke2016

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• remove outdated comments

  jnke2016

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• remove unused variable

  jnke2016

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• add option to skip renumbering

  jnke2016

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• remove outdate else statement

  jnke2016

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• remove 'legacy_renum_only' argument

  jnke2016

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• remove unused variable and fix style

  jnke2016

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• fix copyrights

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-23.02' into branch-22.12_remove-legacy-renum

  jnke2016

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• fix copyrights

  jnke2016

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• remove the argument 'legacy_renum_only'

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-23.02' into branch-22.12_remove-legacy-renum

  jnke2016

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• update docstrings

  jnke2016

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• fix copyrights

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• fix style

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• fix copyrights

  jnke2016

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Commits on Jan 13, 2023

• fix copyrights

  jnke2016

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• remove outdated tests still using cython.cu renumbering

  jnke2016

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Commits on Jan 14, 2023

• fix bug when counting the number of vertices

  jnke2016

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• add description to function call

  jnke2016

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• fix docstrings

  jnke2016

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• update docstrings

  jnke2016

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Commits on Jan 15, 2023

• ensure the 'start_vertices' are of the same dtype as the edgelist

  jnke2016

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Commits on Jan 17, 2023

• ensure 'nstart' and the 'personalization' are of the same type as the edgelist

  jnke2016

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• check type even if the vertex wasn't renumbered

  jnke2016

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Commits on Jan 26, 2023

• ensure vertex IDs are contiguous

  jnke2016

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• update conversion from edgelist to adjacency matrix as a numpy array

  jnke2016

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• fix force_atlas2

  jnke2016

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Commits on Jan 27, 2023

• remove isolated vertex results when computing degrees

  jnke2016

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• refactor test

  jnke2016

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Commits on Jan 31, 2023

• fix renumbering issue

  jnke2016

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• update leiden tests

  jnke2016

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• renumber the edgelist and update tests

  jnke2016

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• update copyrights

  jnke2016

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• update copyright

  jnke2016

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• ensure correct type

  jnke2016

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• fix typo

  jnke2016

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Commits on Feb 1, 2023

• fix assumption that the vertices are always renumbered

  jnke2016

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• fix typo

  jnke2016

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• ensure correct start_list type

  jnke2016

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• ensure correct start_list type

  jnke2016

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• get latest conftest changes

  jnke2016

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Commits on Mar 14, 2023

• fetch latest changes

  jnke2016

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• fix style

  jnke2016

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• fix merge conflicts

  jnke2016

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• fix typo

  jnke2016

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• temporarily enfore renumbering until the algo leverages the CAPI graph

  jnke2016

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Commits on Mar 15, 2023

• drop the 'id' column if it exists

  jnke2016

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Commits on Mar 16, 2023

• temporarily enforce renumbering and drop it once these algos leverage the CAPI

  jnke2016

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• skip obsolete test and add fixme

  jnke2016

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• first cut at C API for some legacy algorithms

  ChuckHastings

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• unrenumber only if the datasets was renumbered in the first place

  jnke2016

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• remove obsolete tests still leveraging the cython.cu renumbering

  jnke2016

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• add comments

  jnke2016

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Commits on Mar 17, 2023

• add test for personalization vertex dtype

  jnke2016

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• add data type check for dataframe argument with vertex column

  jnke2016

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• fix bug in test

  jnke2016

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• fix style

  jnke2016

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• fix logic

  jnke2016

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  3211bda

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  jnke2016

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• implement plc induced_subgraph

  jnke2016

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• replace legacy induced_subgraph by the new implementation leveraging the CAPI

  jnke2016

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• temporarily hardcode the 'offsets'

  jnke2016

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• remove legacy subgraph_extraction

  jnke2016

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• fix copyright

  jnke2016

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• fix style

  jnke2016

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• everything compiles, still need to add tests

  ChuckHastings

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Commits on Mar 19, 2023

• add property in 'NumberMap' to capture renumbering

  jnke2016

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• add method to check renumbering and fix bug

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  jnke2016

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• Merge remote-tracking branch 'upstream/add_c_api_for_several_legacy_algorithms' into branch-22.12_remove-legacy-renum

  jnke2016

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Commits on Mar 21, 2023

• Merge branch 'branch-23.04' into add_c_api_for_several_legacy_algorithms

  ChuckHastings

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Commits on Mar 24, 2023

• finish implementation/testing of C API for these legacy algorithms

  ChuckHastings

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• Merge branch 'branch-23.04' into add_c_api_for_several_legacy_algorithms

  ChuckHastings

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• missed spelling change in python code

  ChuckHastings

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• Merge branch 'branch-23.04' into add_c_api_for_several_legacy_algorithms

  ChuckHastings

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  9d6c3b7

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• enable 'ecg' to follow the plc path

  jnke2016

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• define ecg in the plc API

  jnke2016

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• fix typo

  jnke2016

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• add plc implementation of 'ecg'

  jnke2016

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• merge PR adding CAPI for several legacy algorithms

  jnke2016

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Commits on Mar 25, 2023

• fix typo

  jnke2016

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• temporarily skip test and add fixme

  jnke2016

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• add method creating an opaque pointer to clustering from device array view pointers

  jnke2016

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• temporarily skip test and add fixme

  jnke2016

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• add plc API for several clustering algos

  jnke2016

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• define and implement plc API for several clustering algos

  jnke2016

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• enable legacy clustering algos to leverage the PLC implementation

  jnke2016

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• remove redudant method call/creation

  jnke2016

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Commits on Mar 27, 2023

• update docstrings

  jnke2016

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Commits on Mar 28, 2023

• modify analyze methods for spectral to take vertices and clusters instead of clustering result

  ChuckHastings

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• add sort_by_key function to helper file

  ChuckHastings

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• Merge branch 'branch-23.04' into add_c_api_for_several_legacy_algorithms

  ChuckHastings

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• merge latest change from PR adding CAPI for legacy algorithms

  jnke2016

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• update the PLC API with respect to the CAPI

  jnke2016

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• set vertex default type to int32

  

  jnke2016

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• reset changes to the test

  

  jnke2016

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• need to renumber before sort

  ChuckHastings

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• set vertex default type to int32

  

  jnke2016

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• update tests

  

  jnke2016

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• raise warning if incorrect vertex and clustering dtype are passed

  

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-22.12_remove-legacy-renum' into branch-22.12_remove-legacy-renum

  

  jnke2016

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Commits on Mar 30, 2023

• update branch with the latest cugraph change

  

  jnke2016

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Commits on Mar 31, 2023

• add back renumbering before sorting

  

  jnke2016

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• re-enable skipped tests and remove dead code

  

  jnke2016

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• remove legacy community algorithms and leverage the plc api

  

  jnke2016

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• add PLC API for several community algorithms

  

  jnke2016

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• add method to endure correct data type

  

  jnke2016

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• fix style

  

  jnke2016

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• fix style

  

  jnke2016

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• merge latest changes

  

  jnke2016

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• fix merge conflicts

  

  jnke2016

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• fix merge conflicts

  

  jnke2016

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• add back method to check if two device spans are equal

  

  jnke2016

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Commits on Apr 1, 2023

• properly handle dtype

  

  jnke2016

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• fix style

  

  jnke2016

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Commits on Apr 2, 2023

• update tests

  

  jnke2016

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Commits on Apr 3, 2023

• add new api 'induced_subgraph' and deprecate legacy 'subgraph_extraction'

  

  jnke2016

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• remove cython.cu renumbering path

  

  jnke2016

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• update docstrings

  

  jnke2016

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• update docstrings

  

  jnke2016

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• remove irrelevant files

  

  jnke2016

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• remove unnecessary renumbering

  

  jnke2016

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• add type annotation

  

  jnke2016

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• remove irrelevant file

  

  jnke2016

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• fix style

  

  jnke2016

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• fix typo

  

  jnke2016

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• revert change to the 'weight' column name

  

  jnke2016

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• revert change to the 'weight' column name

  

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  

  jnke2016

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• fix style

  

  jnke2016

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• store original input dataframe

  

  jnke2016

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• update tests

  

  jnke2016

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• update docstrings

  

  jnke2016

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• fix typo

  

  jnke2016

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• properly handle mapping from internal to external vertex IDs

  

  jnke2016

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• add renumbering test when creating a graph with multiple edge attributes

  

  jnke2016

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• fix style

  

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  

  jnke2016

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• Merge branch 'branch-23.04' into branch-22.12_remove-legacy-renum

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  

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• Merge branch 'branch-22.12_remove-legacy-renum' of https://github.com/jnke2016/cugraph into branch-22.12_remove-legacy-renum

  

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  

  jnke2016

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• fetch latest change

  

  jnke2016

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• update docstrings

  

  jnke2016

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Commits on Apr 4, 2023

• remove the argument 'legacy_renum_only' and update docstrings

  

  jnke2016

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• remove the argument 'legacy_renum_only' and update docstrings

  

  jnke2016

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• remove the argument 'legacy_renum_only' and update docstrings

  

  jnke2016

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• update deprecation warning

  

  jnke2016

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• fix style

  

  jnke2016

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• remove shuffle from 'api_docs'

  

  jnke2016

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• update docstrings

  

  jnke2016

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• update tests

  

  jnke2016

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• fix style

  

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  

  jnke2016

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• update tests

  

  jnke2016

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• raise an error if 'renumbering' is set to 'False' for non integers and multi-column vertices

  

  jnke2016

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• fix style

  

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• remove unnecessary tests

  

  jnke2016

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• remove debug print

  

  jnke2016

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• fix typo

  

  jnke2016

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• Merge remote-tracking branch 'upstream/branch-23.04' into branch-22.12_remove-legacy-renum

  

  jnke2016

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• Added cugraph import smoketest to docs build script to hopefully report import errors better.

  rlratzel

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Commits on Apr 5, 2023

• Makes networkx an optional import and uses a string literal for the networkx type in the type annotation to avoid depending on networkx.

  rlratzel

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• Makes networkx an optional import and uses a string literal for the type annotation to avoid depending on networkx.

  rlratzel

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