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Remove null mask for zero nulls in json readers #14451

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Dec 7, 2023
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8 changes: 3 additions & 5 deletions cpp/src/io/json/json_column.cu
Original file line number Diff line number Diff line change
Expand Up @@ -799,9 +799,7 @@ std::pair<std::unique_ptr<column>, std::vector<column_name_info>> device_json_co
// This is to match the existing JSON reader's behaviour:
// - Non-string columns will always be returned as nullable
// - String columns will be returned as nullable, iff there's at least one null entry
if (target_type.id() == type_id::STRING and col->null_count() == 0) {
col->set_null_mask(rmm::device_buffer{0, stream, mr}, 0);
}
if (col->null_count() == 0) { col->set_null_mask(rmm::device_buffer{0, stream, mr}, 0); }

// For string columns return ["offsets", "char"] schema
if (target_type.id() == type_id::STRING) {
Expand Down Expand Up @@ -830,7 +828,7 @@ std::pair<std::unique_ptr<column>, std::vector<column_name_info>> device_json_co
// The null_mask is set after creation of struct column is to skip the superimpose_nulls and
// null validation applied in make_structs_column factory, which is not needed for json
auto ret_col = make_structs_column(num_rows, std::move(child_columns), 0, {}, stream, mr);
ret_col->set_null_mask(std::move(result_bitmask), null_count);
if (null_count != 0) { ret_col->set_null_mask(std::move(result_bitmask), null_count); }
return {std::move(ret_col), column_names};
}
case json_col_t::ListColumn: {
Expand Down Expand Up @@ -877,7 +875,7 @@ std::pair<std::unique_ptr<column>, std::vector<column_name_info>> device_json_co
// The null_mask is set after creation of list column is to skip the purge_nonempty_nulls and
// null validation applied in make_lists_column factory, which is not needed for json
// parent column cannot be null when its children is non-empty in JSON
ret_col->set_null_mask(std::move(result_bitmask), null_count);
if (null_count != 0) { ret_col->set_null_mask(std::move(result_bitmask), null_count); }
return {std::move(ret_col), std::move(column_names)};
}
default: CUDF_FAIL("Unsupported column type"); break;
Expand Down
3 changes: 3 additions & 0 deletions cpp/src/io/json/legacy/reader_impl.cu
Original file line number Diff line number Diff line change
Expand Up @@ -569,6 +569,9 @@ table_with_metadata convert_data_to_table(parse_options_view const& parse_opts,
} else {
out_columns.emplace_back(std::move(out_column));
}
if (out_columns.back()->null_count() == 0) {
out_columns.back()->set_null_mask(rmm::device_buffer{0, stream, mr}, 0);
}
}

std::vector<column_name_info> column_infos;
Expand Down
8 changes: 4 additions & 4 deletions cpp/src/io/json/nested_json_gpu.cu
Original file line number Diff line number Diff line change
Expand Up @@ -2068,11 +2068,13 @@ std::pair<std::unique_ptr<column>, std::vector<column_name_info>> json_column_to

auto make_validity =
[stream, mr](json_column const& json_col) -> std::pair<rmm::device_buffer, size_type> {
auto const null_count = json_col.current_offset - json_col.valid_count;
if (null_count == 0) { return {rmm::device_buffer{}, null_count}; }
return {rmm::device_buffer{json_col.validity.data(),
bitmask_allocation_size_bytes(json_col.current_offset),
stream,
mr},
json_col.current_offset - json_col.valid_count};
null_count};
};

auto get_child_schema = [schema](auto child_name) -> std::optional<schema_element> {
Expand Down Expand Up @@ -2138,9 +2140,7 @@ std::pair<std::unique_ptr<column>, std::vector<column_name_info>> json_column_to
// This is to match the existing JSON reader's behaviour:
// - Non-string columns will always be returned as nullable
// - String columns will be returned as nullable, iff there's at least one null entry
if (target_type.id() == type_id::STRING and col->null_count() == 0) {
col->set_null_mask(rmm::device_buffer{0, stream, mr}, 0);
}
if (col->null_count() == 0) { col->set_null_mask(rmm::device_buffer{0, stream, mr}, 0); }

// For string columns return ["offsets", "char"] schema
if (target_type.id() == type_id::STRING) {
Expand Down
118 changes: 38 additions & 80 deletions cpp/tests/io/json_test.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -145,12 +145,10 @@ MATCHER_P(FloatNearPointwise, tolerance, "Out-of-range")

// temporary method to verify the float columns until
// CUDF_TEST_EXPECT_COLUMNS_EQUAL supports floating point
template <typename T, typename valid_t>
void check_float_column(cudf::column_view const& col,
std::vector<T> const& data,
valid_t const& validity)
template <typename T>
void check_float_column(cudf::column_view const& col, std::vector<T> const& data)
{
CUDF_TEST_EXPECT_COLUMN_PROPERTIES_EQUAL(col, (wrapper<T>{data.begin(), data.end(), validity}));
CUDF_TEST_EXPECT_COLUMN_PROPERTIES_EQUAL(col, (wrapper<T>(data.begin(), data.end())));
EXPECT_EQ(col.null_count(), 0);
EXPECT_THAT(cudf::test::to_host<T>(col).first,
::testing::Pointwise(FloatNearPointwise(1e-6), data));
Expand Down Expand Up @@ -325,11 +323,8 @@ TEST_P(JsonReaderParamTest, BasicJsonLines)
EXPECT_EQ(result.metadata.schema_info[0].name, "0");
EXPECT_EQ(result.metadata.schema_info[1].name, "1");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int_wrapper{{1, 2, 3}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1),
float64_wrapper{{1.1, 2.2, 3.3}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int_wrapper{{1, 2, 3}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2, 3.3}});
}

TEST_P(JsonReaderParamTest, FloatingPoint)
Expand Down Expand Up @@ -366,15 +361,9 @@ TEST_P(JsonReaderParamTest, FloatingPoint)
EXPECT_EQ(result.tbl->num_columns(), 1);
EXPECT_EQ(result.tbl->get_column(0).type().id(), cudf::type_id::FLOAT32);

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(
result.tbl->get_column(0),
float_wrapper{{5.6, 56.79, 12000000000., 0.7, 3.000, 12.34, 0.31, -73.98007199999998},
validity});

auto const bitmask = cudf::test::bitmask_to_host(result.tbl->get_column(0));
ASSERT_EQ((1u << result.tbl->get_column(0).size()) - 1, bitmask[0]);
float_wrapper{{5.6, 56.79, 12000000000., 0.7, 3.000, 12.34, 0.31, -73.98007199999998}});
}

TEST_P(JsonReaderParamTest, JsonLinesStrings)
Expand Down Expand Up @@ -405,10 +394,8 @@ TEST_P(JsonReaderParamTest, JsonLinesStrings)
EXPECT_EQ(result.metadata.schema_info[1].name, "1");
EXPECT_EQ(result.metadata.schema_info[2].name, "2");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int_wrapper{{1, 2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int_wrapper{{1, 2}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(2),
cudf::test::strings_column_wrapper({"aa ", " bbb"}));
}
Expand Down Expand Up @@ -465,8 +452,6 @@ TEST_P(JsonReaderParamTest, MultiColumn)
.legacy(is_legacy_test(test_opt));
cudf::io::table_with_metadata result = cudf::io::read_json(in_options);

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

auto const view = result.tbl->view();

EXPECT_EQ(view.num_columns(), 6);
Expand All @@ -478,15 +463,15 @@ TEST_P(JsonReaderParamTest, MultiColumn)
EXPECT_EQ(view.column(5).type().id(), cudf::type_id::FLOAT64);

CUDF_TEST_EXPECT_COLUMNS_EQUAL(view.column(0),
int8_wrapper{int8_values.begin(), int8_values.end(), validity});
int8_wrapper(int8_values.begin(), int8_values.end()));
CUDF_TEST_EXPECT_COLUMNS_EQUAL(view.column(1),
int16_wrapper{int16_values.begin(), int16_values.end(), validity});
int16_wrapper(int16_values.begin(), int16_values.end()));
CUDF_TEST_EXPECT_COLUMNS_EQUAL(view.column(2),
int_wrapper{int32_values.begin(), int32_values.end(), validity});
int_wrapper(int32_values.begin(), int32_values.end()));
CUDF_TEST_EXPECT_COLUMNS_EQUAL(view.column(3),
int64_wrapper{int64_values.begin(), int64_values.end(), validity});
check_float_column(view.column(4), float32_values, validity);
check_float_column(view.column(5), float64_values, validity);
int64_wrapper(int64_values.begin(), int64_values.end()));
check_float_column(view.column(4), float32_values);
check_float_column(view.column(5), float64_values);
}

TEST_P(JsonReaderParamTest, Booleans)
Expand Down Expand Up @@ -522,10 +507,8 @@ TEST_P(JsonReaderParamTest, Booleans)
EXPECT_EQ(result.tbl->num_columns(), 1);
EXPECT_EQ(result.tbl->get_column(0).type().id(), cudf::type_id::BOOL8);

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0),
bool_wrapper{{true, true, false, false, true}, validity});
bool_wrapper{{true, true, false, false, true}});
}

TEST_P(JsonReaderParamTest, Dates)
Expand Down Expand Up @@ -669,10 +652,8 @@ TEST_P(JsonReaderParamTest, JsonLinesDtypeInference)
EXPECT_EQ(result.metadata.schema_info[1].name, "1");
EXPECT_EQ(result.metadata.schema_info[2].name, "2");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{100, 200}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{100, 200}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(2),
cudf::test::strings_column_wrapper({"aa ", " bbb"}));
}
Expand Down Expand Up @@ -706,10 +687,8 @@ TEST_P(JsonReaderParamTest, JsonLinesFileInput)
EXPECT_EQ(result.metadata.schema_info[0].name, "0");
EXPECT_EQ(result.metadata.schema_info[1].name, "1");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{11, 22}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{11, 22}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}});
}

TEST_F(JsonReaderTest, JsonLinesByteRange)
Expand All @@ -734,10 +713,7 @@ TEST_F(JsonReaderTest, JsonLinesByteRange)
EXPECT_EQ(result.tbl->get_column(0).type().id(), cudf::type_id::INT64);
EXPECT_EQ(result.metadata.schema_info[0].name, "0");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0),
int64_wrapper{{3000, 4000, 5000}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{3000, 4000, 5000}});
}

TEST_P(JsonReaderDualTest, JsonLinesObjects)
Expand All @@ -763,10 +739,8 @@ TEST_P(JsonReaderDualTest, JsonLinesObjects)
EXPECT_EQ(result.tbl->get_column(1).type().id(), cudf::type_id::FLOAT64);
EXPECT_EQ(result.metadata.schema_info[1].name, "col2");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{1}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{2.0}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{1}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{2.0}});
}

TEST_P(JsonReaderDualTest, JsonLinesObjectsStrings)
Expand All @@ -791,11 +765,8 @@ TEST_P(JsonReaderDualTest, JsonLinesObjectsStrings)
EXPECT_EQ(result.metadata.schema_info[1].name, "col2");
EXPECT_EQ(result.metadata.schema_info[2].name, "col3");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{100, 200}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1),
float64_wrapper{{1.1, 2.2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{100, 200}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(2),
cudf::test::strings_column_wrapper({"aaa", "bbb"}));
};
Expand Down Expand Up @@ -870,10 +841,8 @@ TEST_P(JsonReaderDualTest, JsonLinesObjectsOutOfOrder)
EXPECT_EQ(result.metadata.schema_info[1].name, "col2");
EXPECT_EQ(result.metadata.schema_info[2].name, "col3");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{100, 200}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{100, 200}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(2),
cudf::test::strings_column_wrapper({"aaa", "bbb"}));
}
Expand Down Expand Up @@ -952,10 +921,7 @@ TEST_F(JsonReaderTest, ArrowFileSource)
EXPECT_EQ(result.tbl->num_columns(), 1);
EXPECT_EQ(result.tbl->get_column(0).type().id(), cudf::type_id::INT8);

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0),
int8_wrapper{{9, 8, 7, 6, 5, 4, 3, 2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int8_wrapper{{9, 8, 7, 6, 5, 4, 3, 2}});
}

TEST_P(JsonReaderParamTest, InvalidFloatingPoint)
Expand Down Expand Up @@ -1241,12 +1207,8 @@ TEST_P(JsonReaderParamTest, JsonLinesMultipleFileInputs)
EXPECT_EQ(result.metadata.schema_info[0].name, "0");
EXPECT_EQ(result.metadata.schema_info[1].name, "1");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0),
int64_wrapper{{11, 22, 33, 44}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1),
float64_wrapper{{1.1, 2.2, 3.3, 4.4}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{11, 22, 33, 44}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2, 3.3, 4.4}});
}

TEST_P(JsonReaderNoLegacy, JsonLinesMultipleFileInputsNoNL)
Expand Down Expand Up @@ -1286,12 +1248,8 @@ TEST_P(JsonReaderNoLegacy, JsonLinesMultipleFileInputsNoNL)
EXPECT_EQ(result.metadata.schema_info[0].name, "0");
EXPECT_EQ(result.metadata.schema_info[1].name, "1");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0),
int64_wrapper{{11, 22, 33, 44}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1),
float64_wrapper{{1.1, 2.2, 3.3, 4.4}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int64_wrapper{{11, 22, 33, 44}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2, 3.3, 4.4}});
}

TEST_F(JsonReaderTest, BadDtypeParams)
Expand Down Expand Up @@ -1427,7 +1385,10 @@ TEST_F(JsonReaderTest, JsonLongString)
cudf::test::get_default_stream(),
rmm::mr::get_current_device_resource());

cudf::table_view const expected = tbl_view;
cudf::column_view int16_with_mask(repeat_times);
cudf::column_view int16(
int16_with_mask.type(), int16_with_mask.size(), int16_with_mask.head(), nullptr, 0);
cudf::table_view const expected = cudf::table_view{{col1, col2, int16}};
std::map<std::string, data_type> types;
types["col1"] = data_type{type_id::STRING};
types["col2"] = data_type{type_id::STRING};
Expand Down Expand Up @@ -1641,10 +1602,8 @@ TEST_P(JsonReaderParamTest, JsonDtypeSchema)
EXPECT_EQ(result.metadata.schema_info[1].name, "1");
EXPECT_EQ(result.metadata.schema_info[2].name, "2");

auto validity = cudf::detail::make_counting_transform_iterator(0, [](auto i) { return true; });

CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int_wrapper{{1, 2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}, validity});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0), int_wrapper{{1, 2}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), float64_wrapper{{1.1, 2.2}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(2),
cudf::test::strings_column_wrapper({"aa ", " bbb"}));
}
Expand Down Expand Up @@ -1700,8 +1659,7 @@ TEST_F(JsonReaderTest, JsonNestedDtypeSchema)
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0).child(0), int_wrapper{{0, 2, 2, 2}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(0).child(1).child(0),
float_wrapper{{0.0, 123.0}, {false, true}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1),
int_wrapper{{1, 1, 2}, {true, true, true}});
CUDF_TEST_EXPECT_COLUMNS_EQUAL(result.tbl->get_column(1), int_wrapper{{1, 1, 2}});
// List column expected
auto leaf_child = float_wrapper{{0.0, 123.0}, {false, true}};
auto const validity = {1, 0, 0};
Expand Down
9 changes: 3 additions & 6 deletions cpp/tests/io/nested_json_test.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -646,10 +646,8 @@ TEST_P(JsonParserTest, ExtractColumn)
auto const expected_col_count = 2;
EXPECT_EQ(cudf_table.tbl->num_columns(), expected_col_count);

auto expected_col1 =
cudf::test::fixed_width_column_wrapper<double>({0.0, 0.1, 0.2}, {true, true, true});
auto expected_col2 =
cudf::test::fixed_width_column_wrapper<double>({1.0, 1.1, 1.2}, {true, true, true});
auto expected_col1 = cudf::test::fixed_width_column_wrapper<double>({0.0, 0.1, 0.2});
auto expected_col2 = cudf::test::fixed_width_column_wrapper<double>({1.0, 1.1, 1.2});
cudf::column_view parsed_col1 = cudf_table.tbl->get_column(0);
CUDF_TEST_EXPECT_COLUMNS_EQUAL(expected_col1, parsed_col1);
cudf::column_view parsed_col2 = cudf_table.tbl->get_column(1);
Expand Down Expand Up @@ -952,8 +950,7 @@ TEST_P(JsonParserTest, ExtractColumnWithQuotes)

auto expected_col1 =
cudf::test::strings_column_wrapper({R"("0.0")", R"()", R"("2.0")"}, {true, false, true});
auto expected_col2 =
cudf::test::fixed_width_column_wrapper<double>({1.0, 1.1, 2.1}, {true, true, true});
auto expected_col2 = cudf::test::fixed_width_column_wrapper<double>({1.0, 1.1, 2.1});
cudf::column_view parsed_col1 = cudf_table.tbl->get_column(0);
CUDF_TEST_EXPECT_COLUMNS_EQUAL(expected_col1, parsed_col1);
cudf::column_view parsed_col2 = cudf_table.tbl->get_column(1);
Expand Down
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