Data Science Group

Scripts and docs from the Data Science Special Interest Group at the Quadram Institute Bioscience.

⚠️ We are a working group. There are "ice breakers" but we would like to focus on bringing together people who are already beyond the very first steps in R (or Python).

Materials and notes used to facilitate the discussions during the meetings.

• Plotting Phylogenetic trees in R (Nabil-Fareed Alikhan)
• Exploring Statistical Procedures (George Savva)
• Rarefaction of microbiome data (Andrea Telatin and Matteo Calgaro) (data)
• Decision Trees and Random Forrests with Python (Dipali Singh)
• Machine Learning: Cross-validation and Visualizations with Python (Giovanni Birolo)
• Differential Abundance: BENCHDAMIC
• Introduction to Shiny App development (Alise Ponsero)
• MetaPhlAn and HuMANN session

Introductory material:

• Data Science in Python: a primer

Joining the group

If you are a researcher at the QIB and want to join the group, reach out with Core Bioinformatics to be added to the mailing list, and check the intranet events.