[RTM] added an objective to minimize JCS orientation

[EveCharbie]

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2. Did you write a proper documentation (docstrings and ReadMe)
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Changes to Core Features:

• Have you added an explanation of what your changes do and why you'd like us to include them?
• Have you written new examples for your core changes, as applicable?
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This change is 

[codecov]

Codecov Report

Patch coverage: 83.71% and project coverage change: +0.05 🎉

Comparison is base (f87ac04) 81.74% compared to head (7f37601) 81.79%.

Additional details and impacted files

@@            Coverage Diff             @@
##           master     #648      +/-   ##
==========================================
+ Coverage   81.74%   81.79%   +0.05%     
==========================================
  Files         110      112       +2     
  Lines       12429    12557     +128     
==========================================
+ Hits        10160    10271     +111     
- Misses       2269     2286      +17     

Impacted Files	Coverage Δ
bioptim/gui/check_conditioning.py	85.53% <0.00%> (ø)
...imal_control/double_pendulum_torque_driven_IOCP.py	37.06% <37.06%> (ø)
bioptim/limits/phase_transition.py	92.22% <50.00%> (ø)
...es/torque_driven_ocp/example_multi_biorbd_model.py	72.72% <72.72%> (ø)
bioptim/examples/track/track_vector_orientation.py	82.14% <82.14%> (ø)
bioptim/limits/penalty.py	89.81% <82.75%> (-1.30%)	⬇️
...ue_driven_ocp/example_minimize_segment_velocity.py	84.84% <84.84%> (ø)
bioptim/misc/mapping.py	89.63% <89.87%> (ø)
bioptim/optimization/optimization_variable.py	87.63% <92.85%> (ø)
bioptim/interfaces/biorbd_model.py	96.46% <96.34%> (+0.02%)	⬆️
... and 15 more

... and 1 file with indirect coverage changes

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[pariterre]

Reviewed 8 of 8 files at r2, all commit messages.
Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @EveCharbie)

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bioptim/limits/constraints.py line 640 at r2 (raw file):

    TRACK_ANGULAR_MOMENTUM = (PenaltyFunctionAbstract.Functions.minimize_angular_momentum,)
    TRACK_LINEAR_MOMENTUM = (PenaltyFunctionAbstract.Functions.minimize_linear_momentum,)
    MINIMIZE_SEGMENT_ROTATION = (PenaltyFunctionAbstract.Functions.minimize_segment_rotation,)

Change to TRACK?

Code quote:

MINIMIZE_SEGMENT_ROTATION

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bioptim/limits/constraints.py line 641 at r2 (raw file):

    TRACK_LINEAR_MOMENTUM = (PenaltyFunctionAbstract.Functions.minimize_linear_momentum,)
    MINIMIZE_SEGMENT_ROTATION = (PenaltyFunctionAbstract.Functions.minimize_segment_rotation,)
    MINIMIZE_SEGMENT_VELOCITY = (PenaltyFunctionAbstract.Functions.minimize_segment_velocity,)

Change to TRACK?

[EveCharbie]

Reviewable status: all files reviewed, 2 unresolved discussions (waiting on @pariterre)

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bioptim/limits/constraints.py line 640 at r2 (raw file):

Previously, pariterre (Pariterre) wrote…

Change to TRACK?

Done.

---

bioptim/limits/constraints.py line 641 at r2 (raw file):

Previously, pariterre (Pariterre) wrote…

Change to TRACK?

Done.

[pariterre]

Reviewed 5 of 5 files at r3, all commit messages.
Reviewable status: complete! all files reviewed, all discussions resolved (waiting on @EveCharbie)