Clear the modification residue if gene changes

In the annotation edit dialog Refs #2803
pombase · Mar 14, 2024 · 32642e5 · 32642e5
1 parent 8a32c63
commit 32642e5
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Showing 3 changed files with 36 additions and 1 deletion.
diff --git a/canto.yaml b/canto.yaml
@@ -2220,6 +2220,8 @@ available_annotation_type_list:
     evidence_codes:
       - IDA
     detailed_help_path: /docs/modification_annotation
+    clear_extensions_on_feature_change:
+      - residue
   - name: wt_rna_expression
     category: ontology
     ontology_size: small

diff --git a/root/static/js/canto-modules.js b/root/static/js/canto-modules.js
@@ -8612,11 +8612,35 @@ var annotationEditDialogCtrl =
 
     }
 
-    function featureIdWatcher(featureId) {
+    function featureIdWatcher(featureId, prevFeatureId) {
       $q.all([$scope.annotationTypePromise, $scope.filteredFeaturesPromise])
         .then(function (data) {
           var annotationType = data[0];
 
+          if (annotationType.clear_extensions_on_feature_change &&
+              $scope.annotation.extension &&
+              prevFeatureId !== undefined && featureId !== undefined &&
+              prevFeatureId !== featureId) {
+            $.map($scope.annotation.extension,
+                  (orPart) => {
+                    orPart.removeIf((ext) => {
+                      if ($.grep(annotationType.clear_extensions_on_feature_change,
+                                 (rel) => rel == ext.relation)) {
+                        toaster.pop({
+                          type: 'warning',
+                          title: 'The ' + ext.relation + '('  + ext.rangeValue +
+                                    ') extension has been removed because the gene changed',
+                          timeout: 10000,
+                          showCloseButton: true
+                        });
+                        return true;
+                      } else {
+                        return false;
+                      }
+                    });
+                  });
+          }
+
           if (annotationType.second_feature_organism_selector) {
             return;
           }

diff --git a/root/static/js/canto.js b/root/static/js/canto.js
@@ -7,6 +7,15 @@ function trim(a) {
   a=a.replace(/^\s+/,''); return a.replace(/\s+$/,'');
 }
 
+Array.prototype.removeIf = function(callback) {
+    var i = this.length;
+    while (i--) {
+        if (callback(this[i], i)) {
+            this.splice(i, 1);
+        }
+    }
+};
+
 var loadingDiv = $('<div id="loading" style="z-index: 2000;"><img src="' + application_root +
                    '/static/images/spinner.gif"/></div>');