Fixes #15 and #17 issues related to default/other assemblies #18
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… assemblies Adds a defaultValue parameter for the assembly command line option and adds a break so hg38/GRCh38 can be identified.
josephcmurray
changed the title
Uses picocli defaultValue which requires constant string instead of enum, but enables default value display in help text
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Adds a
defaultValueparameter for the assembly command line option for hg19 and adds abreakso hg38/GRCh38 can be identified.