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default assembly not showing #15

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pnrobinson opened this issue Sep 10, 2021 · 0 comments

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bug

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pnrobinson commented Sep 10, 2021

-a, --assembly= genome assembly: hg19, GRCh19, hg38, GRCh38,
default null

pnrobinson added the bug label

josephcmurray mentioned this issue

"Could not identify assembly " for non-default assembly #17

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josephcmurray added a commit to josephcmurray/vcf2omop that referenced this issue


          Fixes pnrobinson#15 and pnrobinson#16 issues related to default/other…

6ce39d6

… assemblies

Adds a defaultValue parameter for the assembly command line option and adds a break so hg38/GRCh38 can be identified.

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