Update: Installation Documenation #6552
Triggered via pull request
December 18, 2024 21:01
deepsidhu85
Status
Success
Total duration
39m 12s
Artifacts
–
ci-test.yml
on: pull_request
docs-build
4m 47s
Matrix: gradle-build
Annotations
15 errors and 8 warnings
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SequencingRunServiceImplIT.testAddSequenceFileToMiseqRunAsAdmin():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/SequencingRunServiceImplIT.java#L71
org.opentest4j.AssertionFailedError: Saved miseq run should have seqence file ==> expected: <true> but was: <false>
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AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessPhylogenomicsPairedParametersIgnoreDefaultValues():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L999
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 13/1/testReference10874021250637377457.fasta does not exist
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AnalysisExecutionServiceGalaxyIT.testExecuteAnalysisSuccess():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L247
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 21/1/testReference16385014664850263094.fasta does not exist
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AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunFailInvalidWorkflowStatus():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L306
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 38/1/testReference16626417416907796606.fasta does not exist
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AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccess():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L157
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 39/1/testReference1416074377115301232.fasta does not exist
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LoginPageLdapNoServerIT.testLoginNoLdapServer():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/LoginPageLdapNoServerIT.java#L41
org.opentest4j.AssertionFailedError: expected: <http://127.0.0.1:42705/irida/login?ldap-error=6> but was: <http://127.0.0.1:42705/irida/login?error=true>
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AnalysisDetailsPageIT.testUnknownPipelineOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L450
org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>
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AnalysisDetailsPageIT.testOutputFiles():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L139
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Output File Preview'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1436-604', ip: '10.1.0.6', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.139, chrome: {chromedriverVersion: 131.0.6778.108 (3b014839fbc..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:41503}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:41503/devtoo..., se:cdpVersion: 131.0.6778.139, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 780e605e551bdc2182e673c7fdd57fbf
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AnalysisDetailsPageIT.testSistrOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L285
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "1" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1436-604', ip: '10.1.0.6', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.139, chrome: {chromedriverVersion: 131.0.6778.108 (3b014839fbc..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:41503}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:41503/devtoo..., se:cdpVersion: 131.0.6778.139, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 780e605e551bdc2182e673c7fdd57fbf
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AnalysisDetailsPageIT.testProvenance():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L206
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Provenance'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1436-604', ip: '10.1.0.6', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.139, chrome: {chromedriverVersion: 131.0.6778.108 (3b014839fbc..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:41503}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:41503/devtoo..., se:cdpVersion: 131.0.6778.139, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 780e605e551bdc2182e673c7fdd57fbf
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AnalysisDetailsPageIT.testSamplesPage():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L235
org.openqa.selenium.StaleElementReferenceException: stale element reference: stale element not found in the current frame
(Session info: chrome=131.0.6778.139)
For documentation on this error, please visit: https://selenium.dev/exceptions/#stale_element_reference
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1436-604', ip: '10.1.0.6', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Command: [780e605e551bdc2182e673c7fdd57fbf, getElementAttribute {id=f.701B6B811B17BEC462BFF5A7176947F0.d.A5846334B25EB009C6308DB3EE4367B0.e.4108, name=data-error}]
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.139, chrome: {chromedriverVersion: 131.0.6778.108 (3b014839fbc..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:41503}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:41503/devtoo..., se:cdpVersion: 131.0.6778.139, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Element: [[ChromeDriver: chrome on LINUX (780e605e551bdc2182e673c7fdd57fbf)] -> tag name: main]
Session ID: 780e605e551bdc2182e673c7fdd57fbf
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AnalysisDetailsPageIT.testPipelineResultsWithoutSpecialTab():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L193
org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>
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AnalysisDetailsPageIT.testTabRoutingAnalysisCompleted():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L316
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1436-604', ip: '10.1.0.6', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.139, chrome: {chromedriverVersion: 131.0.6778.108 (3b014839fbc..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:41503}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:41503/devtoo..., se:cdpVersion: 131.0.6778.139, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 780e605e551bdc2182e673c7fdd57fbf
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AnalysisDetailsPageIT.testTreeOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L379
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az1436-604', ip: '10.1.0.6', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.139, chrome: {chromedriverVersion: 131.0.6778.108 (3b014839fbc..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:41503}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:41503/devtoo..., se:cdpVersion: 131.0.6778.139, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 780e605e551bdc2182e673c7fdd57fbf
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AnalysisDetailsPageIT.testAnalysisDetails():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L73
org.opentest4j.AssertionFailedError: The correct details are displayed for the analysis ==> expected: <true> but was: <false>
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gradle-build (open_api_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docs-build
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (file_system_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (rest_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (service_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (galaxy_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (galaxy_pipeline_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (ui_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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