chore(deps): Update spring-security and oauth2 implementation #6411
Triggered via pull request
November 13, 2024 18:30
ericenns
Status
Failure
Total duration
49m 59s
Artifacts
–
ci-test.yml
on: pull_request
docs-build
4m 44s
Matrix: gradle-build
Annotations
19 errors and 24 warnings
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gradle-build (ui_testing)
Docker build failed with exit code 1
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gradle-build (galaxy_testing)
Singleton bean creation not allowed while singletons of this factory are in destruction (Do not request a bean from a BeanFactory in a destroy method implementation!)
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AnalysisExecutionServiceGalaxyIT.testPrepareSubmissionFailInvalidGalaxyWorkflowFile():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1
java.sql.SQLIntegrityConstraintViolationException: Cannot delete or update a parent row: a foreign key constraint fails (`irida_integration_test`.`qc_entry`, CONSTRAINT `FK_SEQOBJECT_QC_ENTRY` FOREIGN KEY (`sequencingObject_id`) REFERENCES `sequencing_object` (`id`))
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AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessPhylogenomics():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1
java.sql.SQLIntegrityConstraintViolationException: Cannot delete or update a parent row: a foreign key constraint fails (`irida_integration_test`.`analysis_submission`, CONSTRAINT `FK_ANALYIS_SUBMISSION_SUBMITTER_ID` FOREIGN KEY (`submitter`) REFERENCES `user` (`id`))
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AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsFailInvalidId():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1374
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 23/1/testReference9724664826384134012.fasta does not exist
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AnalysisExecutionServiceGalaxyIT.testCleanupCompletedAnalysisFailGalaxy():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1558
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 24/1/testReference16262573356275683136.fasta does not exist
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AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunCleanupFailInvalidRemoteAnalysisId():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L348
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 28/1/testReference10531696454114415365.fasta does not exist
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AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccessNoCleanupAge():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L191
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 31/1/testReference14440423452943222981.fasta does not exist
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gradle-build (rest_testing)
Process completed with exit code 1.
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RESTAnalysisSubmissionControllerIT.testReadAllSubmissionsBySistrTypeUser():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L90
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testReadAllSubmissionsBySistrTypeAdmin():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L77
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testReadIncompleteSubmission():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L111
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testReadAllSubmissionsUser():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L64
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testReadAllSubmissionsByPhylogenomicsTypeUser():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L85
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testReadAllSubmissionsByPhylogenomicsTypeAdmin():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L72
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testReadAllSubmissionsAdmin():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L59
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testGetOutputFile():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L146
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testGetAnalysis():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L122
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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RESTAnalysisSubmissionControllerIT.testReadSubmission():
src/test/java/ca/corefacility/bioinformatics/irida/web/controller/test/integration/analysis/RESTAnalysisSubmissionControllerIT.java#L102
java.lang.IllegalStateException: Expected response body to be verified as JSON, HTML or XML but no content-type was defined in the response.
Try registering a default parser using:
RestAssured.defaultParser(<parser type>);
Content was:
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gradle-build (ui_testing)
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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gradle-build (ui_testing)
Docker build failed with exit code 1, back off 6.587 seconds before retry.
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gradle-build (ui_testing)
Docker build failed with exit code 1, back off 7.802 seconds before retry.
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gradle-build (open_api_testing)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gradle-build (open_api_testing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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gradle-build (open_api_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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docs-build
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-ruby@v1, actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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docs-build
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/cache@v3, actions/setup-ruby@v1, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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docs-build
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (file_system_testing)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gradle-build (file_system_testing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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gradle-build (file_system_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (service_testing)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gradle-build (service_testing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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gradle-build (service_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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gradle-build (galaxy_testing)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gradle-build (galaxy_testing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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gradle-build (galaxy_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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gradle-build (galaxy_pipeline_testing)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gradle-build (galaxy_pipeline_testing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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gradle-build (galaxy_pipeline_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
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gradle-build (rest_testing)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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gradle-build (rest_testing)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
|
|
gradle-build (rest_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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