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Fix to include metadata when installing with pip/conda #109

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merged 3 commits into from
Aug 23, 2019
Merged

Fix to include metadata when installing with pip/conda #109

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ddef175
fix to include metadata when installing with pip/conda
DarianHole Aug 23, 2019
300117c
Merge branch 'development' into include_metadata_schemes
Takadonet Aug 23, 2019
f1a580b
recommend tsv
DarianHole Aug 23, 2019
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2 changes: 1 addition & 1 deletion bio_hansel/main.py
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Expand Up @@ -57,7 +57,7 @@ def init_parser():
parser.add_argument('--scheme-name',
help='Custom user-specified SNP substyping scheme name')
parser.add_argument('-M', '--scheme-metadata',
help='Scheme subtype metadata table (CSV or tab-delimited format; must contain "subtype" column)')
help='Scheme subtype metadata table (CSV or TSV format (TSV highly recommended!); must contain "subtype" column)')
parser.add_argument('-p', '--paired-reads',
nargs=2,
metavar=('forward_reads', 'reverse_reads'),
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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -34,7 +34,7 @@
keywords='Salmonella enterica Heidelberg Enteritidis SNP kmer subtyping Aho-Corasick',
classifiers=classifiers,
package_dir={program_name: program_name},
package_data={program_name: ['data/*/*.fasta',]},
package_data={program_name: ['data/*/*.fasta', 'data/*/*.tsv',]},
install_requires=[
'numpy>=1.12.1',
'pandas>=0.20.1',
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