Merge pull request #109 from phac-nml/include_metadata_schemes

Fix to include metadata when installing with pip/conda
phac-nml · Aug 23, 2019 · b5c1f5d · b5c1f5d
2 parents 9845135 + f1a580b
commit b5c1f5d
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/bio_hansel/main.py b/bio_hansel/main.py
@@ -57,7 +57,7 @@ def init_parser():
     parser.add_argument('--scheme-name',
                         help='Custom user-specified SNP substyping scheme name')
     parser.add_argument('-M', '--scheme-metadata',
-                        help='Scheme subtype metadata table (CSV or tab-delimited format; must contain "subtype" column)')
+                        help='Scheme subtype metadata table (CSV or TSV format (TSV highly recommended!); must contain "subtype" column)')
     parser.add_argument('-p', '--paired-reads',
                         nargs=2,
                         metavar=('forward_reads', 'reverse_reads'),

diff --git a/setup.py b/setup.py
@@ -34,7 +34,7 @@
     keywords='Salmonella enterica Heidelberg Enteritidis SNP kmer subtyping Aho-Corasick',
     classifiers=classifiers,
     package_dir={program_name: program_name},
-    package_data={program_name: ['data/*/*.fasta',]},
+    package_data={program_name: ['data/*/*.fasta', 'data/*/*.tsv',]},
     install_requires=[
         'numpy>=1.12.1',
         'pandas>=0.20.1',