-
Notifications
You must be signed in to change notification settings - Fork 22
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
command line interface #108
Draft
yfukai
wants to merge
179
commits into
peng-lab:dev
Choose a base branch
from
yfukai:command_line
base: dev
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Draft
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Update defaults
Update readme for beta release
Test Windows and macOS
* udpated transform method * fixed tests * fixed typo * solving problems with tests * fixed transform bug * removed tests for rescaling-fitting * removed resized transform example * added dask test * set baseline type to optinal * updated testdata * deleted notebook outputs * Update timelapse * re-organized transform part * tests running... * made the resize method changable * resize method tested * tested resize method * added comments for the transform function * minor fix * fixed fitting_weight shape bug Co-authored-by: Tim Morello <[email protected]>
* updating notebooks * updated rescaled data * updated test data * update notebooks * Fixed most unit tests * re-added reference comparison notebook * re-added test data Co-authored-by: Nicholas-Schaub <[email protected]>
* udpated transform method * fixed tests * fixed typo * solving problems with tests * fixed transform bug * removed tests for rescaling-fitting * removed resized transform example * added dask test * set baseline type to optinal * updated testdata * deleted notebook outputs * Update timelapse * re-organized transform part * tests running... * made the resize method changable * resize method tested * tested resize method * added comments for the transform function * minor fix * fixed fitting_weight shape bug * fixed dask-related bug Co-authored-by: Tim Morello <[email protected]>
* updated hashes to newer ones * changed source to main * ci experiment with dev branch * updated branch * added tests for wrong argments * updated classifier to beta * updated copyright * just added spaces * updated downsampled data to Zenodo * renamed data to datasets * typo fix... * deleted depricated tools * fixed package names ... * import fix * 👥 Update @yfukai as a contributor * added my contribution for ci... * removed deprecated routines from old DCT2d * updated tests and fixed jax version to solve problems
* updated hashes to newer ones * changed source to main * ci experiment with dev branch * updated branch * added tests for wrong argments * updated classifier to beta * updated copyright * just added spaces * updated downsampled data to Zenodo * renamed data to datasets * typo fix... * deleted depricated tools * fixed package names ... * import fix * 👥 Update @yfukai as a contributor * added my contribution for ci... * removed deprecated routines from old DCT2d * trying to add darkfield weight and changing weight for ladmap * fixed typo * added attribute * updated tests and fixed jax version to solve problems * rewrite ladmap to normalize B * working ver? * updated test data * udpated weight for darkfield * updated test data * removed print * fixed normalization const * added test to show basic does not depend on the intensity scale * small update
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Adding command line interface with click