My edits to rnaseq sr #2
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…om 0.1.1 to 0.1.2
…ors option introduced
…from 1.1.4 to 1.1.5
…n single-end workflow
…roject.org TODO: work out support for either baseUrl, set on the fly? Maybe yagni.
Unset nuxt base path prefix to support iwc.galaxyproject.org
I assume it was meant like this
…ch-1 Clarify masthead links
first release of RNAseq DE analysis, filtering and plotting workflow
[BHEU2024] Update workflows/imaging/fluorescence-nuclei-segmentation-and-counting from 0.1 to 0.2
- use fastp instead of cutadapt which allows optional adapters - generate a combined report if additional QC are not wanted - include the gene counts from STAR in the multiQC - hide more intermediate outputs - do not consider FeatureCounts Summary Table as a workflow output
My proposed changes to RNA-seq PE
…deseq Update PE RNA-seq workflow
- improve changelog - use fastp instead of cutadapt - update cufflinks - add multiQC even if no additional QC are performed. - hide intermediate steps - change some parameter names - update README to better description of parameters - add missing asserts in tests
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@lldelisle there are 120 commits and 43 files changed. It should merge the updates from the main branch. Should I merge? |
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You're right. #3 is probably cleaner. |
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I merged the main branch of IWC +
- use verion 1.0
- improve changelog
- use fastp instead of cutadapt
- update cufflinks
- add multiQC even if no additional QC are performed.
- hide intermediate steps
- change some parameter names
- update README to better description of parameters
- add missing asserts in tests