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Issues: oushujun/LTR_retriever

Dependency checking: The RMblast engine is not installed in R...
#43 by Donbbit was closed Mar 26, 2019
Closed 13
LTR insertion time
#82 by liulu0827 was closed Sep 22, 2020
Closed 7
LAI for ployploid
#83 by Jiny000 was closed Nov 11, 2020
Closed 4
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19 Open 157 Closed
19 Open 157 Closed
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Issues list

Can I calculate LAI for each chromosome and average it?
#185 opened Nov 27, 2024 by ltachi11
LTR age Kimura distance
#184 opened Nov 17, 2024 by fmaumusINRA
LTR insertion time
#182 opened Oct 27, 2024 by hlin1221
1
Specify the output directory
#180 opened Sep 23, 2024 by Lucien-Piat
1
The difference in LAI evaluated using the two methods is significant.
#179 opened Sep 18, 2024 by dongaoqian
3
substr outside of string at /data/00/user/user101/software/LTR_retriever/LTR_retriever/bin/call_seq_by_list.pl line 129
#178 opened Sep 16, 2024 by aaannaw
1
ID Conversion
#175 opened Jul 16, 2024 by rmhubley
1
TSDs are not identical question
#174 opened Jul 8, 2024 by ala98412
3
Calculated LAI is too large
#171 opened May 21, 2024 by yaoxkkkkk
6
Kimura2Paramter to ks value/Time question
#170 opened Apr 28, 2024 by manoharbisht1998
4
LTR retriever is not compatible with RepeatModeler2 since v2.9.8?
#169 opened Apr 11, 2024 by BitaoQiu
5
Exploring the transposition profile of specific LTRs question
#168 opened Apr 8, 2024 by shuren7
2
Assessing Chrysanthemum lavandulifolium genome assembly
#167 opened Apr 1, 2024 by zhangdeng1992
3
Dependency checker looking in wrong directory for makeblastdb question
#166 opened Mar 25, 2024 by benfulton
1
The LTR_retriever fails to identify LTRs with tandem repeats, such as Dasheng.
#165 opened Mar 18, 2024 by CSU-KangHu
3
same bug before about LTR.identifier.pl
#163 opened Feb 27, 2024 by Z1997B
3
cleanup.pl Bug?
#162 opened Feb 13, 2024 by asgray
3
Are there any changes in Module 1 between versions 2.9.0 and 2.9.9?
#161 opened Jan 15, 2024 by ala98412
3
LAI does not improve despite sequencing and assembly improvements enhancement
#87 opened Jan 28, 2021 by oushujun
21
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