AQ Laboratory

All

14 repositories

ring-flash-attention
Public
Ring attention implementation with flash attention
Python
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MIT License
•52•0•0•0•Updated Jan 1, 2025Jan 1, 2025
openfold
Public
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
protein-structure pytorch alphafold2
Python
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Apache License 2.0
•553•2.9k•180•20•Updated Dec 4, 2024Dec 4, 2024
QuickBind
Public
A Light-Weight And Interpretable Molecular Docking Model
Jupyter Notebook
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MIT License
•0•20•1•0•Updated Oct 23, 2024Oct 23, 2024
insilico_design_pipeline
Public
In-silico design pipeline for evaluating protein structure diffusion models.
Python
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Apache License 2.0
•3•20•0•0•Updated Jun 25, 2024Jun 25, 2024
genie2
Public
Protein structure diffusion model for unconditional protein generation and motif scaffolding
Python
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Apache License 2.0
•20•134•6•1•Updated Jun 24, 2024Jun 24, 2024
hsm
Public
Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
Jupyter Notebook
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MIT License
•21•71•2•1•Updated Apr 26, 2024Apr 26, 2024
genie
Public
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
protein-design diffusion-models
Python
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Apache License 2.0
•19•173•1•0•Updated Apr 21, 2024Apr 21, 2024
rgn2
Public
Python
•29•102•3•1•Updated Nov 28, 2023Nov 28, 2023
proteinnet
Public
Standardized data set for machine learning of protein structure
machine-learning deep-learning proteins protein-structure dataset protein-sequence
Python
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MIT License
•132•874•16•0•Updated Nov 18, 2020Nov 18, 2020
hsm-web
Public
Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
HTML
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MIT License
•3•7•0•0•Updated Jan 8, 2020Jan 8, 2020
rgn
Public
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
deep-neural-networks deep-learning protein-structure protein-structure-prediction
Python
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MIT License
•87•326•17•1•Updated Aug 1, 2019Aug 1, 2019
pnerf
Public
machine-learning proteins protein-structure molecular-dynamics molecular-simulation molecular-modeling
Python
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MIT License
•6•35•1•0•Updated Jul 22, 2019Jul 22, 2019
hth-dna-db
Public
Database of HTH-DNA complexes
machine-learning protein-structure transcription-factor-binding transcriptional-regulatory-network protein-dna-interactions
Mathematica
•1•1•0•0•Updated Aug 23, 2015Aug 23, 2015
sh2-cancer
Public
MSM model of SH2-phosphoprotein cancer networks
machine-learning cancer signaling-networks protein-protein-interaction
Mathematica
•3•9•0•0•Updated Aug 14, 2014Aug 14, 2014