hsm-web - Biophysical prediction of protein-peptide interactions and signaling networks using machine learning.
This repository contains the code associated with the website for Biophysical prediction of protein-peptide interactions and signaling networks using machine learning.. The website is located at proteinpeptide.io. The website depends on downloading pre-processed data from figshare and placing the directories into assets.
Please reference the associated publication:
Cunningham, J.M., Koytiger, G., Sorger, P.K., & AlQuraishi, M. "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning." Nature Methods (2020). doi:10.1038/s41592-019-0687-1.
- Paper code:aqlaboratory/hsm
- Protein Viewer: 3Dmol.js
- Network Viewer: D3.js
- Styling / Layout: Bootstrap stack
This work was supported by the following sources:
| Funder | Grant number |
|---|---|
| NIH | U54-CA225088 |
| NIH | P50-GM107618 |
| DARPA / DOD | W911NF-14-1-0397 |
This repository is released under an MIT License