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    • fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
      Perl
      Other
      01560Updated Jan 11, 2025Jan 11, 2025
    • detection of cancer splicing aberrations
      Perl
      Other
      3960Updated Nov 22, 2024Nov 22, 2024
    • Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
      HTML
      Other
      1874440Updated Jul 20, 2024Jul 20, 2024
    • Python
      0000Updated Jun 24, 2024Jun 24, 2024
    • benchmarking utilities for ctat-mutations
      Python
      0100Updated Oct 29, 2024Oct 29, 2024
    • Python
      BSD 3-Clause "New" or "Revised" License
      51531Updated Nov 22, 2023Nov 22, 2023
    • Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components
      Perl
      BSD 3-Clause "New" or "Revised" License
      210101Updated Oct 27, 2023Oct 27, 2023
    • 3411631Updated Sep 5, 2023Sep 5, 2023
    • WDL
      1100Updated Jul 7, 2023Jul 7, 2023
    • 0200Updated Mar 7, 2022Mar 7, 2022
    • extended testing data for ctat mutations pipe
      0100Updated Aug 26, 2021Aug 26, 2021
    • code for running alternative rna-based variant detection tools and benchmarking
      Python
      2000Updated May 18, 2020May 18, 2020
    • find viruses and microbes using centrifuge
      Perl
      0000Updated Apr 19, 2019Apr 19, 2019
    • mutations

      Public
      calling variants from RNA-Seq data
      Python
      1400Updated Nov 10, 2017Nov 10, 2017
    • Genome guided transcript reconstruction
      0000Updated Oct 24, 2017Oct 24, 2017
    • transcript expression quantification
      0000Updated Oct 24, 2017Oct 24, 2017
    • lncRNA

      Public
      lncRNA classification
      0000Updated Oct 24, 2017Oct 24, 2017