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    55 repositories

    • CPT-ToolshedSource

      Public
      Python
      •1•1•12•6•Updated Oct 24, 2024Oct 24, 2024

    • training-material

      Public
      A collection of Galaxy-related training material
      HTML
      •
      Other
      •922•3•5•0•Updated Mar 4, 2024Mar 4, 2024

    • galaxy-tools

      Public
      CPT's Galaxy Tools
      HTML
      •
      GNU General Public License v3.0
      •4•6•4•1•Updated Jul 5, 2022Jul 5, 2022

    • galaxy_blast_TaxID_CPT

      Public
      CPT branch of the project factoring in our TaxID changes
      Python
      •70•0•0•0•Updated Jun 30, 2022Jun 30, 2022

    • CPT_GffParser

      Public
      An extensively featured Python parser for GFF format reading and writing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•1•1•Updated Mar 8, 2022Mar 8, 2022

    • docker-recipes

      Public
      Dockerfile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 3, 2022Feb 3, 2022

    • Apollo

      Public
      Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
      Groovy
      •
      Other
      •85•0•5•0•Updated Nov 22, 2021Nov 22, 2021

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •3.3k•0•0•0•Updated Oct 25, 2021Oct 25, 2021

    • rancher-catalog

      Public
      Python
      •
      Apache License 2.0
      •235•0•0•0•Updated Mar 31, 2021Mar 31, 2021

    • tools-iuc

      Public
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      HTML
      •
      MIT License
      •441•0•0•0•Updated Sep 9, 2020Sep 9, 2020

    • dockerized-gmod-deployment

      Public
      🐳📊📚 Galaxy + Apollo + Chado + Tripal + JBrowse + JBrowse REST API + PostGraphQL + JBrowse GraphQL Experiment all as a docker-compose.yml
      Python
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Jan 13, 2020Jan 13, 2020

    • cpt-annotation-deployment

      Public
      Dockerized deployment for Apollo, JBrowse, and additional tools for annotation work supported by CPT
      0•0•0•0•Updated Jan 8, 2020Jan 8, 2020

    • Phage-Registry

      Public
      Go
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Sep 18, 2019Sep 18, 2019

    • docker-apollo

      Public
      🐳 Apollo 2.X Docker Image
      JavaScript
      •
      GNU General Public License v3.0
      •17•0•0•0•Updated Feb 15, 2019Feb 15, 2019

    • docker-galaxy-stable

      Public
      🐳📊📚 Docker Images tracking the stable Galaxy releases.
      Dockerfile
      •
      MIT License
      •134•0•1•0•Updated Jan 14, 2019Jan 14, 2019

    • docker-postgres-backup

      Public
      Simple cron pg_dumpall for automated postgres backup to file in volume.
      dockerpostgresql
      Shell
      •
      Apache License 2.0
      •27•0•0•0•Updated Jun 5, 2018Jun 5, 2018

    • LaTeX-styles

      Public
      LaTeX styles
      latexpdflatex
      TeX
      •2•1•0•0•Updated May 29, 2018May 29, 2018

    • cacao-frontend

      Public
      HTML
      •
      GNU Affero General Public License v3.0
      •0•0•6•0•Updated Apr 5, 2018Apr 5, 2018

    • blast-db-download

      Public
      Simple blast / ebi downloader with JUnit reporting for use in Jenkins
      Perl
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Feb 13, 2018Feb 13, 2018

    • xunit-python-decorator

      Public
      Use a simple with statement to capture information for XUnit tests
      pythonxunit
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 22, 2017Oct 22, 2017

    • CICADA

      Public
      CookieCutter template for Automated DRF Angular
      JavaScript
      •
      Other
      •2•4•0•0•Updated Jul 5, 2017Jul 5, 2017

    • spanins

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •1•0•0•0•Updated Jun 28, 2017Jun 28, 2017

    • mauved3

      Public
      JavaScript
      •
      GNU Affero General Public License v3.0
      •1•0•4•0•Updated Jun 28, 2017Jun 28, 2017

    • blastview

      Public
      JBrowse plugin for viewing Blast results
      JavaScript
      •
      GNU Affero General Public License v3.0
      •0•1•3•0•Updated Jun 1, 2017Jun 1, 2017

    • SitewideNotices

      Public
      JBrowse plugin for display site-wide notices
      JavaScript
      •0•0•0•0•Updated Jun 1, 2017Jun 1, 2017

    • cacao-apollo-plugin

      Public
      JBrowse plugin for talking to CACAO Servers
      JavaScript
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Jun 1, 2017Jun 1, 2017

    • galaxy-apollo

      Public
      Apollo interface from Galaxy tools
      Python
      •
      MIT License
      •2•0•0•0•Updated Jun 1, 2017Jun 1, 2017

    • multi-starts

      Public
      Looks for multiple start sites within different fluorescent genes
      Python
      •0•0•0•0•Updated May 17, 2017May 17, 2017

    • cacao-backend

      Public
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•16•0•Updated May 9, 2017May 9, 2017

    • phagehosts

      Public
      categorizes phages based on bacterial host information
      Python
      •0•0•1•0•Updated May 2, 2017May 2, 2017