Galaxy tools to interface with Apollo The webapollo.py file is also separately available as a pip-installable package.
The following environment variables must be set:
| ENV | Use |
|---|---|
$GALAXY_WEBAPOLLO_URL |
The URL at which Apollo is accessible, internal to Galaxy and where the tools run. Must be absolute, with FQDN and protocol. |
$GALAXY_WEBAPOLLO_USER |
The admin user which Galaxy should use to talk to Apollo. |
$GALAXY_WEBAPOLLO_PASSWORD |
The password for the admin user. |
$GALAXY_WEBAPOLLO_EXT_URL |
The external URL at which Apollo is accessible to end users. May be relative or absolute. |
$GALAXY_SHARED_DIR |
Directory shared between Galaxy and Apollo, used to exchange JBrowse instances. |
All python scripts, wrappers, and the webapollo.py are licensed under MIT license.
This material is based upon work supported by the National Science Foundation under Grant Number (Award 1565146)