CACAO Backend

This is the backend for the CPT's implementation of GONUTS (GO normal usage tracking system) for CACAO, or Community Annotation of Community Assessment with Ontologies.

Usage

Set up a virtual environment and install requirements

$ virtualenv venv
$ . venv/bin/activate
$ pip install -r requirements.txt

Migrate

$ python manage.py migrate

Load fixtures

We've created some sample data:

$ python manage.py loaddata fixtures/quickstart.json

Run

$ python manage.py runserver

JBrowse Integration

If you want to view your annotations in JBrowse, add the following to your trackList.json file and point it at your backend url.

{
  "label": "my_rest_track",
  "key": "REST Test Track",
  "storeClass": "JBrowse/Store/SeqFeature/REST",
  "baseUrl": "https://server_url/jbrowse/",
  "query": {
    "organism": "Miro"
  },
  "style": {
    "color": "function(feature){ if(feature.data.state == 1){ return 'yellow'; } if(feature.data.state == 2){ return 'green';} return 'red';}"
  },
  "type": "JBrowse/View/Track/CanvasFeatures",
  "trackType": "JBrowse/View/Track/CanvasFeatures"
}

License

This software is licensed under AGPL-3.0.