Repositories list

• docker_singularity_recipes

  Public
  A collection of docker and singularity recipes for informatic analysis

  C

  •0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• slurm_snakemake

  Public
  Resources necessary to submit a snakejob on alpine

  R

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• snakemake_pipelines

  Public
  A collection of snakemake pipelines to analyze various data types. This is under active development.

  pipeline

  R

  •

  MIT License

  •1•2•1•0•Updated Nov 12, 2024Nov 12, 2024

• scAnalysisR

  Public
  A package to analyze single cell data in R. This package is under active development.

  R

  •

  MIT License

  •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• Tutorials

  Public
  Tutorials for the BDC

  tutorials

  Shell

  •0•2•0•0•Updated Apr 15, 2024Apr 15, 2024

• alpine_guide

  Public
  A guide for using the alpine server at the University of Colorado

  Shell

  •0•3•0•0•Updated Mar 16, 2024Mar 16, 2024

• RBFOX2_project

  Public
  Analysis pipeline and original code for RBFOX2 project - RNA-Seq and eCLIP-Seq.

  R

  •0•1•0•0•Updated Sep 11, 2023Sep 11, 2023

• Smith_210825_b_cell_analysis

  Public
  Analysis of human B cells for Mia Smith, Catherine Nicolas, and Zach Stensland

  R

  •

  MIT License

  •0•0•0•0•Updated Apr 10, 2023Apr 10, 2023

• .github

  Public
  0•0•0•0•Updated Sep 14, 2022Sep 14, 2022

• Smith2022-CyTOF-analysis-CytoTree

  Public
  Script used for analyzing mass cytometry data using CytoTree (https://github.com/JhuangLab/CytoTree)

  R

  •0•0•0•0•Updated Jul 18, 2022Jul 18, 2022

• benniger_tf_regulators

  Public
  Analysis to accompany "Dynamic changes in β-cell [Ca 2+ ] regulates NFAT activation, gene transcription and islet gap junction communication" published in Molecular Metabolism

  R

  •

  MIT License

  •1•0•0•0•Updated Jan 6, 2022Jan 6, 2022