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Specify container with lspci for GPU WDL example. #659

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merged 3 commits into from
Jun 25, 2024

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stxue1
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@stxue1 stxue1 commented Jun 6, 2024

This should close #653.

The test_gpu_task.wdl example assumes that the lspci command exists in the task environment. However, the SPEC also says the default container when it is unspecified is up to the engine.

I'm assuming that the default container for an engine doesn't need to provide the lspci command. I grabbed a docker container that should be decently up to date, maintained, and provides lspci so the test should be working out of the box after this PR.

I'm not making a changelog entry as I think this is just a bug fix.

Checklist

  • Pull request details were added to CHANGELOG.md
  • Valid examples WDL's were added or updated to the SPEC.md (see the guide on writing markdown tests)

@jdidion jdidion changed the base branch from wdl-1.1 to wdl-1.1.3 June 25, 2024 16:31
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Rebasing to wdl-1.1.3

SPEC.md Outdated Show resolved Hide resolved
@jdidion jdidion merged commit 5f139ec into openwdl:wdl-1.1.3 Jun 25, 2024
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Example WDL test for gpu's does not work depending on default executor container
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