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A remerge of Sync: bring OntoPortal up-to-date with BioPortal releases 6.13.2 and onward #18

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merged 69 commits into from
Jan 18, 2024

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A re-merging of #17 without squashing

jvendetti and others added 29 commits November 13, 2023 10:53
Also prevent wrapping of column header text
Fixes Uglifier::Error that prevents asset precompilation
Add download link for Virtual Appliance v3.2.2
Prevents a jumpy page appearance when the ontologies loading message is displayed
The sanitize method was stripping the href attribute. See #298.
Account for the case where the user parameter doesn't have the ontology attribute loaded on the list of associated subscription objects
Fix various issues with notes emails subscriptions
…onward (#17)

* Bump bootstrap from 4.1.0 to 5.2.3

* Refactor home page cards

* Refactor top navigation bar

* Fix close buttons on dismissible alerts

* Refactor sticky footer code

* Repair Admin tabbed interface

* Refactor form to fix spacing issues

* Remove unused styles

* Remove unnecessary nested fluid container

* Refactor form to fix spacing issues

* Fix alignment issue with annotator plus spinner

* Fix broken tabbed navigation for ontology tabs

* Remove text decoration in the ontology info bar

* Clean up display of ontology information buttons

* Restore bold font in ontology metadata cards

* Restore bold font for submissions header

* Remove anchor text decoration for metadata cards

* Restore border at the top of the submissions table

* Remove bottom border from show more subs cell

* Restore top borders to details and metrics tables

* Fix add proposal dropdown button

* Fix class permalink dialog

* Fix create new mapping dialog

* Fix add and remove synonym dialogs

* Adjust buttons on create mapping dialog

* Refactor create new mapping form

* Add back platforms overwritten during merge

* Refactor horizontal form to fix spacing issues

* Restore padding in class details pane

* Refactor class search form to fix spacing issues

* Restore appearance of search links

* Restore left alignment in ontology column

* add download link for OntoPortal Virtual Appliance v3.2.1

* Restore link appearance in ontology column

* Refactor form to fix spacing and alignment issues

* Fix footer layout and presentation issues

* Remove text-decoration for ontology visits

Also prevent wrapping of column header text

* Fix node obsoletion form

* Fix node rename form

* jQuery toggle no longer needed

* Fix create and remove synonym dialog forms

* Fix jump to input group

* Remove text decoration for details and mappings

* Replace Uglifier with Terser

Fixes Uglifier::Error that prevents asset precompilation

* Pin graphql gem to less than 2.1

* Pin base64 gem to 0.1.0

See #293

* Remove text decoration from ontology list

* Restore space underneath filter text box

* Add download link for Virtual Appliance v3.2.2

* Use regular dropdown instead of split type

* Display site notices above loading splash div

Prevents a jumpy page appearance when the ontologies loading message is displayed

* Update Gemfile.lock

* Adjust font size for autocomplete results list

Resolves #296

* Fix login requirement for notes email subscriptions

The sanitize method was stripping the href attribute. See #298.

* Encode user ID portion of subscriptions params

Resolves #300

* Fix Uncaught TypeError on notes emails subscribe

See #298

* Fix some RuboCop warnings

* Refactor subscribed_to_ontology? method

Account for the case where the user parameter doesn't have the ontology attribute loaded on the list of associated subscription objects

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Co-authored-by: Alex Skrenchuk <[email protected]>
@syphax-bouazzouni syphax-bouazzouni merged commit c5b46be into ontoportal:master Jan 18, 2024
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3 participants