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ome / ome-zarr-py Public

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Add support for HCS 0.4 specification#159

Merged

sbesson merged 14 commits intoome:masterome/ome-zarr-py:masterfrom sbesson:hcs_0.4sbesson/ome-zarr-py:hcs_0.4Copy head branch name to clipboard

Jan 19, 2022

+227-40

Conversation Commits14 (14)Checks Files changed

Commits

Commits on Jan 18, 2022

Migrate well generation and validation logic under Format class
sbesson
committed
Add support for 0.4 HCS specification
sbesson
committed
Add internal logic for validating rows/columns
sbesson
committed
Also validate the fact each well path must have exactly one separator
sbesson
committed
Specification key is columnIndex
sbesson
committed
Add unit tests for the case where Zarr group names do not match row/columns
sbesson
committed
Migrate well.path validation to FormatV04
sbesson
committed
Update Format.validate_well_dict to support rows/columns input
sbesson
committed
Add check that the well path can be derived from the row/column names
sbesson
committed
Add additional checks for row and column index to validate_well_dict
sbesson
committed
Do not include abstractmethod in code coverage report
sbesson
committed
Fix tests for well paths with invalid number of separators
sbesson
committed

Commits on Jan 19, 2022

Increase coverage and verbosity of invalid wells
sbesson
committed
Fix failing wells comments
sbesson
committed

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