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When doing nf-core lint,
a line like: conda "conda-forge::r-base bioconda::bioconductor-deseq2 bioconda::bioconductor-biocparallel bioconda::bioconductor-tximport bioconda::bioconductor-complexheatmap conda-forge::r-optparse conda-forge::r-ggplot2 conda-forge::r-rcolorbrewer conda-forge::r-pheatmap"
can result in multiple Conda version not specified correctly:
│ breadthofcoverage │ modules/local/breadthofcoverage.nf │ Conda version not specified correctly │
│ plotauthenticationscore │ modules/local/plotauthenticationscore.nf │ Conda version not specified correctly │
│ plotauthenticationscore │ modules/local/plotauthenticationscore.nf │ Conda version not specified correctly │
│ plotauthenticationscore │ modules/local/plotauthenticationscore.nf │ Conda version not specified correctly │
│ plotauthenticationscore │ modules/local/plotauthenticationscore.nf │ Conda version not specified correctly │
but this is hard to figure out what is triggering the linting.
The text was updated successfully, but these errors were encountered:
Tried to do this with GitHub Copilot Workspaces but it failed 😅
As I was looking at the code anyway I could see the fix so figured I would put it manually.
Closes#3009
Untested, done in web browser only.
Description of feature
When doing
nf-core lint
,a line like:
conda "conda-forge::r-base bioconda::bioconductor-deseq2 bioconda::bioconductor-biocparallel bioconda::bioconductor-tximport bioconda::bioconductor-complexheatmap conda-forge::r-optparse conda-forge::r-ggplot2 conda-forge::r-rcolorbrewer conda-forge::r-pheatmap"
can result in multiple
Conda version not specified correctly
:but this is hard to figure out what is triggering the linting.
The text was updated successfully, but these errors were encountered: