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Merge pull request #1361 from maxulysse/animate_subway
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Animate subway map
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maxulysse authored Aug 26, 2024
2 parents 6588b06 + 3c8bc75 commit 715adf1
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -115,6 +115,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
- [PR #1357](https://github.com/nf-core/rnaseq/pull/1357) - Fix anchor issue in multiqc
- [PR #1358](https://github.com/nf-core/rnaseq/pull/1358) - Update test profiles to restore a static URI for megatests
- [PR #1359](https://github.com/nf-core/rnaseq/pull/1359) - Update MultiQC and revert unnecessary workaround
- [PR #1361](https://github.com/nf-core/rnaseq/pull/1361) - Animate subway map
- [PR #1362](https://github.com/nf-core/rnaseq/pull/1362) - Move multiqc module prefix for nf-test to module

### Parameters
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4 changes: 3 additions & 1 deletion README.md
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**nf-core/rnaseq** is a bioinformatics pipeline that can be used to analyse RNA sequencing data obtained from organisms with a reference genome and annotation. It takes a samplesheet and FASTQ files as input, performs quality control (QC), trimming and (pseudo-)alignment, and produces a gene expression matrix and extensive QC report.

![nf-core/rnaseq metro map](docs/images/nf-core-rnaseq_metro_map_grey.png)
![nf-core/rnaseq metro map](docs/images/nf-core-rnaseq_metro_map_grey_animated.svg)

> In case the image above is not loading, please have a look at the [static version](docs/images/nf-core-rnaseq_metro_map_grey.png).
1. Merge re-sequenced FastQ files ([`cat`](http://www.linfo.org/cat.html))
2. Auto-infer strandedness by subsampling and pseudoalignment ([`fq`](https://github.com/stjude-rust-labs/fq), [`Salmon`](https://combine-lab.github.io/salmon/))
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