-
Notifications
You must be signed in to change notification settings - Fork 752
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Update glimpse/phase output channel to phased_variants #5172 #5174
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Co-authored-by: Matthias Hörtenhuber <[email protected]>
FriederikeHanssen
approved these changes
Mar 19, 2024
jvfe
added a commit
to jvfe/modules
that referenced
this pull request
Mar 19, 2024
* master: Fix test for FASTQ_FASTQC_UMITOOLS_FASTP which included an absolute path in the snapshot. (nf-core#5278) added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158 (nf-core#5197) Update glimpse/phase output channel to phased_variants nf-core#5172 (nf-core#5174) Add module: GTFSORT (nf-core#5237) add nf-test to bedtools/sort - nf-core#3936 (nf-core#5221) addedd optional output channel for lib files (nf-core#5257)
vlebars
pushed a commit
to vlebars/modules
that referenced
this pull request
Mar 20, 2024
…f-core#5174) * Update glimpse/phase output channel to phased_variants * Update nf-test * Update tags and meta.yml * Update tags in ligate * Fix typo * Delete non use argument * Update tags in sbwf * Update test data * Update tag nftest * Change extension individuals files * Update genetic map * Change map by chromosome * Update vcf_impute_glimpse nftest * Update to phased_variants * Update glimpse concordance * Update modules/nf-core/glimpse/ligate/meta.yml Co-authored-by: Matthias Hörtenhuber <[email protected]> --------- Co-authored-by: Matthias Hörtenhuber <[email protected]>
tucano
pushed a commit
to tucano/modules
that referenced
this pull request
Mar 20, 2024
…f-core#5174) * Update glimpse/phase output channel to phased_variants * Update nf-test * Update tags and meta.yml * Update tags in ligate * Fix typo * Delete non use argument * Update tags in sbwf * Update test data * Update tag nftest * Change extension individuals files * Update genetic map * Change map by chromosome * Update vcf_impute_glimpse nftest * Update to phased_variants * Update glimpse concordance * Update modules/nf-core/glimpse/ligate/meta.yml Co-authored-by: Matthias Hörtenhuber <[email protected]> --------- Co-authored-by: Matthias Hörtenhuber <[email protected]>
jennylsmith
pushed a commit
to RSC-RP/modules
that referenced
this pull request
Mar 20, 2024
…f-core#5174) * Update glimpse/phase output channel to phased_variants * Update nf-test * Update tags and meta.yml * Update tags in ligate * Fix typo * Delete non use argument * Update tags in sbwf * Update test data * Update tag nftest * Change extension individuals files * Update genetic map * Change map by chromosome * Update vcf_impute_glimpse nftest * Update to phased_variants * Update glimpse concordance * Update modules/nf-core/glimpse/ligate/meta.yml Co-authored-by: Matthias Hörtenhuber <[email protected]> --------- Co-authored-by: Matthias Hörtenhuber <[email protected]>
alexnater
pushed a commit
to alexnater/nf-core-modules
that referenced
this pull request
Mar 21, 2024
…f-core#5174) * Update glimpse/phase output channel to phased_variants * Update nf-test * Update tags and meta.yml * Update tags in ligate * Fix typo * Delete non use argument * Update tags in sbwf * Update test data * Update tag nftest * Change extension individuals files * Update genetic map * Change map by chromosome * Update vcf_impute_glimpse nftest * Update to phased_variants * Update glimpse concordance * Update modules/nf-core/glimpse/ligate/meta.yml Co-authored-by: Matthias Hörtenhuber <[email protected]> --------- Co-authored-by: Matthias Hörtenhuber <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
PR checklist
Rename phase_variant to phased_variants
Closes #5172
versions.yml
file.label
nf-core modules test <MODULE> --profile docker
nf-core modules test <MODULE> --profile singularity
nf-core modules test <MODULE> --profile conda
nf-core subworkflows test <SUBWORKFLOW> --profile docker
nf-core subworkflows test <SUBWORKFLOW> --profile singularity
nf-core subworkflows test <SUBWORKFLOW> --profile conda