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update Dockerfile for cellranger #7

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merged 2 commits into from
Mar 13, 2020
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thanhleviet
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Many thanks to contributing to nf-core/demultiplex!

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If necessary, also make a PR on the nf-core/demultiplex branch on the nf-core/test-datasets repo
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Make sure your code lints (nf-core lint .).
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated

Learn more about contributing: https://github.com/nf-core/demultiplex/tree/master/.github/CONTRIBUTING.md

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@TomKellyGenetics TomKellyGenetics left a comment

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With the added dependencies here (and installation of tSNE #8). This should be able to run cellranger on the updated GitHub repository.

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@drpatelh
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Thanks alot @thanhleviet @TomKellyGenetics 👍

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3 participants