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Unpin Biopython
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This reverts commit "Pin Biopython 1.81" (4edf282), which is no longer
necessary as of Augur version 24.1.0.

<https://github.com/nextstrain/augur/releases/tag/24.1.0>
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victorlin committed Jan 31, 2024
1 parent 0b3fccd commit 4bc1d8b
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -337,10 +337,9 @@ RUN pip3 install phylo-treetime
# Augur is an editable install so we can overlay the augur version in the image
# with --volume=.../augur:/nextstrain/augur and still have it globally
# accessible and importable.
# Pin Biopython 1.81: https://github.com/nextstrain/augur/issues/1373
WORKDIR /nextstrain/augur
RUN /builder-scripts/download-repo https://github.com/nextstrain/augur "$(/builder-scripts/latest-augur-release-tag)" . \
&& pip3 install --editable . biopython==1.81
&& pip3 install --editable .

# Add evofr for forecasting
RUN pip3 install evofr
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