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Pin Biopython 1.81
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Issue linked in changes. Pin to an exact version which is known to be
compatible.
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victorlin committed Dec 22, 2023
1 parent 3f0edaa commit 4edf282
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion Dockerfile
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Expand Up @@ -341,9 +341,10 @@ RUN pip3 install phylo-treetime
# Augur is an editable install so we can overlay the augur version in the image
# with --volume=.../augur:/nextstrain/augur and still have it globally
# accessible and importable.
# Pin Biopython 1.81: https://github.com/nextstrain/augur/issues/1373
WORKDIR /nextstrain/augur
RUN /builder-scripts/download-repo https://github.com/nextstrain/augur "$(/builder-scripts/latest-augur-release-tag)" . \
&& pip3 install --editable .
&& pip3 install --editable . biopython==1.81

# Add evofr for forecasting
RUN pip3 install evofr
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