Code

[Feature] detrend R-R intervals#711

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danibene merged 42 commits intoneuropsychology:devneuropsychology/NeuroKit:devfrom danibene:feature/detrend_rridanibene/NeuroKit:feature/detrend_rriCopy head branch name to clipboardSep 28, 2022

+465-200

Commits

Commits on Sep 21, 2022

• sanitize input such that input is always rri and rri_time, not peaks

  danibene

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• sanitize rri when directly passed

  danibene

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• add find_successive_intervals

  danibene

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• check that R-R interval timestamps were passed in seconds

  danibene

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• modify HRV functions for R-R intervals as input

  danibene

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• add option to directly pass R-R intervals to docstring

  danibene

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• code checks

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• use sampling_rate in _hrv_sanitize_input

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• don't use rri_time in hrv_time (will do so when adjusting for possible missing data)

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• code checks

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• code checks

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• modify intervals_to_peaks to preserve given sampling rate and timepoints

  danibene

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• format input for all hrv functions, as either intervals or peaks

  danibene

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• add test for R-R intervals as input

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• increase tolerance for test because there are missing values

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Commits on Sep 25, 2022

• Merge branch 'dev' into pr/710

  DominiqueMakowski

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• ensure that input is numpy array

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  danibene

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• remove cardiac from docstring

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  danibene

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• ensure input is array in _hrv_sanitize_rri

  danibene

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Commits on Sep 26, 2022

• update docstring example format to ipython

  DominiqueMakowski

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Commits on Sep 27, 2022

• rename to intervals_successive

  DominiqueMakowski

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• Update intervals_to_peaks.py

  DominiqueMakowski

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• move intervals_successive to hrv_utils.py

  danibene

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• refactor intervals_preprocess and intervals_sanitize

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• move intervals_to_peaks to hrv

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• update init

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• restructure again and add documentation

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• update imports

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• create intervals_utils.py to avoid circular imports

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• update name of intervals_preprocess in hrv.py

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• return None if no intervals are passed

  danibene

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• formatting

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• Add option to detrend in intervals_preprocess

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• update arguments passed to intervals_preprocess

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• Merge branch 'feature/rri_input_hrv' into feature/detrend_rri

  danibene

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• update argument passed to _intervals_sanitize

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• Merge branch 'feature/rri_input_hrv' into feature/detrend_rri

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• reformat

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Commits on Sep 28, 2022

• add one example

  danibene

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• sanitize input

  danibene

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• rename intervals_preprocess to intervals_process

  danibene

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• update docs to include intervals functions in hrv

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