Fixes instantation of Cohort when providing directory of the pipeline… #19
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…. Also fixes issues with NA in certain columns that results in no metadata json creation since the function checks if the input is NULL.
…plesheet processing such that it now works when ./samplesheet.csv is provided for nf-casereports or the full path. Passes tests in test-Cohort.R ort and test-signatures.R following changes.
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Fixes instantation of Cohort when providing directory of the pipeline. Also fixes issues with NA in certain columns that results in no metadata json creation since the function checks if the input is NULL.
Solution for NA in certain columns: Set to null at top of create_metadata function is the entry is NA.