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Docs docstrings #419

Merged
merged 3 commits into from
Oct 18, 2018
Merged

Docs docstrings #419

merged 3 commits into from
Oct 18, 2018

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jdhughes-usgs
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Update docstrings for HeadObservation, ModflowHobs, and ModflowFlwob
classes.
Update docstrings fpr sphinx.
# Conflicts:
#	flopy/modflow/mfhob.py
#	flopy/version.py
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Coverage decreased (-0.2%) to 69.065% when pulling b071b4d on jdhughes-usgs:docs-docstrings into fa9ceda on modflowpy:develop.

@jdhughes-usgs jdhughes-usgs merged commit 7683195 into modflowpy:develop Oct 18, 2018
@jdhughes-usgs jdhughes-usgs deleted the docs-docstrings branch October 18, 2018 12:37
jdhughes-usgs pushed a commit that referenced this pull request Oct 18, 2018
#414)

* update(ModflowFlwob and ModflowHob): added "no_print", "options", and "filenames" kwargs.

*  refactor(modpath): refactor MODPATH 7 particle classes

Refactor MODPATH 7 particle classes to make a clear distinction between
particle groups and particle data (locations, etc.).

* Changes to LKT for dealing with multi-species simulations that include lakes (#412)

* Explicit cast to np.array isn't preserved

* Fixes issue in LAK package _init_ routines when only a single lake is active

* Previous alteration worked for one lake, but didn't handle one stage for multiple lakes.  This should account for that condition

* Fix mis-statement

* LMT: Lacking support for keyword 'ALL' following Package_Flows keyword

* Add precision for variable thkmin

* PERLEN variable getting trucated by use of "G" (general form) when number of significant digits was > 4.

* Switching printing of PERLEN in BTN from 10.6G to 10G

* Fix for issue #402 including a new test for checking mtlkt.py

* Remove apostrophe from comment (interferes with Travis build)

* Rename test, another recent commit had the same name

* Remove argument from call to test

* refactor(modpath): refactor particledata (#416)

Refactor ParticleData (input style 1) so that it is the same as the 
node template (input style 3). Refactor NodeParticleTemplates 
particles into a single class. Add starting particle location data 
input style 2.

* New jupyter notebook for MT3D-USGS (#415)

* Explicit cast to np.array isn't preserved

* Fixes issue in LAK package _init_ routines when only a single lake is active

* Previous alteration worked for one lake, but didn't handle one stage for multiple lakes.  This should account for that condition

* Fix mis-statement

* LMT: Lacking support for keyword 'ALL' following Package_Flows keyword

* Add precision for variable thkmin

* PERLEN variable getting trucated by use of "G" (general form) when number of significant digits was > 4.

* Switching printing of PERLEN in BTN from 10.6G to 10G

* Fix for issue #402 including a new test for checking mtlkt.py

* Remove apostrophe from comment (interferes with Travis build)

* Rename test, another recent commit had the same name

* Remove argument from call to test

* Adding new example notebook for MT3D-USGS that uses SFT, LKT, and UZT, including connections between them

* Fixed a typo, added link for docs/notebook_examples.md in a reasonable section of the document

* An errant capital letter in the new notebook, switched to lowercase

* docs: update documentation (#417)

Update docstrings for MFGridFile class. Update README.md and
CONTRIBUTING.md. Update pre-commit.py to use develop branch for
branches with "-" or ":" in the branch name (it is assumed these
are bug fix or feature branches for the develop branch.

* refactor(lgrutil.py) : redesign of the hidden lgrutil gem

Unfortunately, this breaks backward compatibility (if anyone was using this).  But the new implementation should be a little easier to use.  Still  need to implement ghost nodes.

* Removed old newline character before "NOPRINT".

* docs: update docstrings (#418)

Update docstrings for HeadObservation, ModflowHobs, and ModflowFlwob
classes.

Closed #406

* docs: update docstrings (#419)

Update docstrings for sphinx.

* refactor(Modflow): Forgive loading models with an incomplete BAS6 package (#420)

* raise IOError if external file does not exist

* remove requirement that BAS6 needs to be loaded in full

* update(ModflowFlwob and ModflowHob): add condition test to check for user-specified output file names.

* update(ModflowFlwob and ModflowHob): reworked additional code again after refactorization of upstream branch.

* update(ModflowFlwob and ModflowHob): reordered kwargs in __init__ to reflect order in docstring.

* update(ModflowFlwob and ModflowHob): reworked additional code again after refactorization of upstream branch.

* update(ModflowFlwob and ModflowHob): pass list of filenames to Package.__init__() to achieve desired output file names.

* update(ModflowFlwob and ModflowHob): updated HOB test and added new code to test FLWOBS.

* update(ModflowFlwob and ModflowHob): pass mf executable name to new model upon load.
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