Workflow file for this run
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| name: MODFLOW 6 continuous integration | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| - ci-diagnose* | |
| - ncci | |
| paths-ignore: | |
| - '**.md' | |
| - 'doc/**' | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| paths-ignore: | |
| - '**.md' | |
| - 'doc/**' | |
| jobs: | |
| netcdf_test_win: | |
| name: netcdf4 testing | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ windows-2022 ] | |
| #hdf5: [ 1.12.2 ] | |
| #netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ] | |
| #netcdf: [ v4.9.0, main ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| FC: gfortran | |
| GCC_V: 12 | |
| steps: | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: modflow6 | |
| - name: Setup MSYS2 | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| update: true | |
| install: | | |
| git | |
| make | |
| mingw-w64-x86_64-gcc | |
| mingw-w64-x86_64-python | |
| mingw-w64-x86_64-python-pip | |
| mingw-w64-x86_64-python-pytest | |
| - name: Setup GNU Fortran ${{ env.GCC_V }} | |
| uses: awvwgk/setup-fortran@main | |
| with: | |
| compiler: gcc | |
| version: ${{ env.GCC_V }} | |
| - name: Install System dependencies | |
| shell: msys2 {0} | |
| run: | | |
| pacman -Syu | |
| pacman -S --noconfirm --needed base-devel unzip mingw-w64-x86_64-toolchain mingw-w64-x86_64-libtool mingw-w64-x86_64-cmake | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| create-args: >- | |
| pkg-config | |
| netcdf-fortran | |
| init-shell: >- | |
| bash | |
| powershell | |
| cache-environment: true | |
| cache-downloads: true | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| #echo "LD_LIBRARY_PATH=/d/a/_temp/msys64/mingw64/lib" >> $GITHUB_ENV | |
| #echo "PATH=/d/a/_temp/msys64/mingw64/bin" >> $GITHUB_ENV | |
| #echo "PATH=/d/a/_temp/msys64/mingw64/bin:/d/a/modflow6/modflow6/modflow6/bin:/d/a/modflow6/modflow6/ncf/netcdf-fortran-4.6.0/fortran/.libs" >> $GITHUB_ENV | |
| find /c/Users/runneradmin/micromamba/envs | grep -i netcdf | |
| which nf-config | |
| which nc-config | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| - name: Show Meson logs | |
| if: failure() | |
| working-directory: modflow6 | |
| run: cat builddir/meson-logs/meson-log.txt | |
| - name: Check exe | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: | | |
| which dumpbin | |
| which dumpbin.exe | |
| echo "LD_LIBRARY_PATH:" | |
| echo $LD_LIBRARY_PATH | |
| echo "PATH:" | |
| echo $PATH | |
| ls -l /d/a/modflow6/modflow6/modflow6/bin | |
| echo "FILE:" | |
| file /d/a/modflow6/modflow6/modflow6/bin/mf6.exe | |
| echo "LDD1:" | |
| ldd /d/a/modflow6/modflow6/modflow6/bin/mf6.exe | |
| which mf6.exe | |
| #mf6.exe | |
| DYLD_LIBRARY_PATH=/d/a/modflow6/modflow6/modflow6/bin mf6.exe --version | |
| - name: Update flopy | |
| working-directory: modflow6/autotest | |
| run: python update_flopy.py | |
| - name: Get executables | |
| working-directory: modflow6/autotest | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} | |
| run: pytest -v --durations 0 get_exes.py | |
| - name: Test nc4 program | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: | | |
| pytest -v test_gwf_chd01.py -s --keep temp | |
| cat temp/test_mf6model[chd01]0/mfsim.lst | grep -i netcdf | |
| - name: Test programs | |
| working-directory: modflow6/autotest | |
| env: | |
| REPOS_PATH: ${{ github.workspace }} | |
| run: | | |
| branch="${{ github.ref_name }}" | |
| marker="not large" | |
| markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker") | |
| pytest -v -n auto --durations 0 -m "$markers" | |