ci3.yml

name: MODFLOW 6 continuous integration
on:
  push:
    branches:
      - master
      - develop
      - ci-diagnose*
      - ncci
    paths-ignore:
      - '**.md'
      - 'doc/**'
  pull_request:
    branches:
      - master
      - develop
    paths-ignore:
      - '**.md'
      - 'doc/**'
jobs:

  netcdf_test_win:
    name: netcdf4 testing
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ windows-2022 ]
        #hdf5: [ 1.12.2 ]
        #netcdf: [ v4.7.4, v4.8.1, v4.9.0, main ]
        #netcdf: [ v4.9.0, main ]
    defaults:
      run:
        shell: bash -l {0}
    env:
      FC: gfortran
      GCC_V: 12
    steps:

      - name: Checkout modflow6
        uses: actions/checkout@v3
        with:
          path: modflow6

      - name: Setup MSYS2
        uses: msys2/setup-msys2@v2
        with:
          update: true
          install: |
            git
            make
            mingw-w64-x86_64-gcc
            mingw-w64-x86_64-python
            mingw-w64-x86_64-python-pip
            mingw-w64-x86_64-python-pytest

      - name: Setup GNU Fortran ${{ env.GCC_V }}
        uses: awvwgk/setup-fortran@main
        with:
          compiler: gcc
          version: ${{ env.GCC_V }}

      - name: Install System dependencies
        shell: msys2 {0}
        run: |
          pacman -Syu
          pacman -S --noconfirm --needed base-devel unzip mingw-w64-x86_64-toolchain mingw-w64-x86_64-libtool mingw-w64-x86_64-cmake

      - name: Setup Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: modflow6/environment.yml
          create-args: >-
            pkg-config
            netcdf-fortran
          init-shell: >-
            bash
            powershell
          cache-environment: true
          cache-downloads: true

      - name: Build modflow6
        working-directory: modflow6
        run: |
          #echo "LD_LIBRARY_PATH=/d/a/_temp/msys64/mingw64/lib" >> $GITHUB_ENV
          #echo "PATH=/d/a/_temp/msys64/mingw64/bin" >> $GITHUB_ENV
          #echo "PATH=/d/a/_temp/msys64/mingw64/bin:/d/a/modflow6/modflow6/modflow6/bin:/d/a/modflow6/modflow6/ncf/netcdf-fortran-4.6.0/fortran/.libs" >> $GITHUB_ENV
          find /c/Users/runneradmin/micromamba/envs | grep -i netcdf
          which nf-config
          which nc-config
          meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin
          meson install -C builddir

      - name: Show Meson logs
        if: failure()
        working-directory: modflow6
        run: cat builddir/meson-logs/meson-log.txt

      - name: Check exe
        working-directory: modflow6/autotest
        env:
          REPOS_PATH: ${{ github.workspace }}
        run: |
          which dumpbin
          which dumpbin.exe
          echo "LD_LIBRARY_PATH:"
          echo $LD_LIBRARY_PATH
          echo "PATH:"
          echo $PATH
          ls -l /d/a/modflow6/modflow6/modflow6/bin
          echo "FILE:"
          file /d/a/modflow6/modflow6/modflow6/bin/mf6.exe
          echo "LDD1:"
          ldd /d/a/modflow6/modflow6/modflow6/bin/mf6.exe
          which mf6.exe
          #mf6.exe
          DYLD_LIBRARY_PATH=/d/a/modflow6/modflow6/modflow6/bin mf6.exe --version

      - name: Update flopy
        working-directory: modflow6/autotest
        run: python update_flopy.py

      - name: Get executables
        working-directory: modflow6/autotest
        env:
          GITHUB_TOKEN: ${{ github.token }}
        run: pytest -v --durations 0 get_exes.py

      - name: Test nc4 program
        working-directory: modflow6/autotest
        env:
          REPOS_PATH: ${{ github.workspace }}
        run: |
          pytest -v test_gwf_chd01.py -s --keep temp
          cat temp/test_mf6model[chd01]0/mfsim.lst | grep -i netcdf

      - name: Test programs
        working-directory: modflow6/autotest
        env:
          REPOS_PATH: ${{ github.workspace }}
        run: |
          branch="${{ github.ref_name }}"
          marker="not large"
          markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker")
          pytest -v -n auto --durations 0 -m "$markers"