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fix(setup): fixes for make setup #34

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fix(setup): fixes for make setup #34

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12 changes: 11 additions & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -94,7 +94,17 @@ See [linkml/linkml-project-cookiecutter](https://github.com/linkml/linkml-projec
Change to the folder your generated project is in

```bash
cd linkml-projects/my-awesome-schema # using the folder example above
cd my-awesome-schema # using the folder example above
```

Connect project to Git
```bash
git init
git remote add origin https://github.com/my-org/my-awesome-schema.git
```

Setup the LinkML project
```bash
make setup
```

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14 changes: 7 additions & 7 deletions {{cookiecutter.project_name}}/Makefile
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Expand Up @@ -8,17 +8,17 @@ SHELL := bash

RUN = poetry run
# get values from about.yaml file
SCHEMA_NAME = $(shell sh ./utils/get-value.sh name)
SOURCE_SCHEMA_PATH = $(shell sh ./utils/get-value.sh source_schema_path)
SCHEMA_NAME = $(shell ${SHELL} ./utils/get-value.sh name)
SOURCE_SCHEMA_PATH = $(shell ${SHELL} ./utils/get-value.sh source_schema_path)
SOURCE_SCHEMA_DIR = $(dir $(SOURCE_SCHEMA_PATH))
SRC = src
DEST = project
PYMODEL = $(SRC)/$(SCHEMA_NAME)/datamodel
DOCDIR = docs
EXAMPLEDIR = examples
SHEET_MODULE = {{cookiecutter.__google_sheet_module}}
SHEET_ID = $(shell sh ./utils/get-value.sh google_sheet_id)
SHEET_TABS = $(shell sh ./utils/get-value.sh google_sheet_tabs)
SHEET_ID = $(shell ${SHELL} ./utils/get-value.sh google_sheet_id)
SHEET_TABS = $(shell ${SHELL} ./utils/get-value.sh google_sheet_tabs)
SHEET_MODULE_PATH = $(SOURCE_SCHEMA_DIR)/$(SHEET_MODULE).yaml

# basename of a YAML file in model/
Expand Down Expand Up @@ -97,19 +97,19 @@ gen-project: $(PYMODEL)

test: test-schema test-python
test-schema:
$(RUN) gen-project -d tmp $(SOURCE_SCHEMA_PATH)
$(RUN) gen-project -d tmp $(SOURCE_SCHEMA_PATH)

test-python:
$(RUN) python -m unittest discover

lint:
$(RUN) linkml-lint $(SOURCE_SCHEMA_PATH)
$(RUN) linkml-lint $(SOURCE_SCHEMA_PATH)

check-config:
@(grep my-datamodel about.yaml > /dev/null && printf "\n**Project not configured**:\n\n - Remember to edit 'about.yaml'\n\n" || exit 0)

convert-examples-to-%:
$(patsubst %, $(RUN) linkml-convert % -s $(SOURCE_SCHEMA_PATH) -C Person, $(shell find src/data/examples -name "*.yaml"))
$(patsubst %, $(RUN) linkml-convert % -s $(SOURCE_SCHEMA_PATH) -C Person, $(shell find src/data/examples -name "*.yaml"))

examples/%.yaml: src/data/examples/%.yaml
$(RUN) linkml-convert -s $(SOURCE_SCHEMA_PATH) -C Person $< -o $@
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